Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.29966	Ptbp2	polypyrimidine tract binding protein 2	3		56195
Gene Ontology	mRNA splice site selection | nucleic acid binding | pre-mRNA splicing factor activity | spliceosome complex
Human Homolog	PTBP2[polypyrimidine tract binding protein 2]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 148 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAATA (3) ATTCTGACAA CACTGATTTA CTCAATAAAC (2) GCTCATTAAA TATATTTTCT TATATTTTTT (2) TATGGCCTTT (2) TATTTTTAAA (3) 53.7 0.0537 Cb medulloblastoma AAAAAAAATA (3) CACTGATTTA GCTCATTAAA TATATTTTCT TATTTTTCAA (3) 57.7 0.0577 P8 GC+1d culture AAAAAAAATA (3) CACTGATTTA CTGTTATCAT GCTCATTAAA TATATTTTCT TATTTTTCAA (3) 63.8 0.0638 P8 GC+SHH+1d culture CACTGATTTA CAGCTTTTAA (2) CCATCATCAG (4) CTCAATAAAC (2) CTGTTATCAT GCTCATTAAA TATATTTTCT TATGGCCTTT (2) TATGTAATAT (2) TATTTTTCAA (3) 70.3 0.0703 3T3 fibroblasts CACTGATTTA 3.5 0.0035 E15 cortex CACTGATTTA GCTCATTAAA 24.7 0.0247 P1 cortex CACTGATTTA CCATCATCAG (4) CTCAATAAAC (2) TATTTTTAAA (3) TATTTTTCAA (3) TCTCTATTAA 68.1 0.0681 Hypothalamus CACTGATTTA CTCAATAAAC (2) GCTCATTAAA TATATTTTCT TATGGCCTTT (2) TATTTTTCAA (3) 68.8 0.0688 E12.5 retina CACTGATTTA CAGCTTTTAA (2) CTCAATAAAC (2) CTGTTATCAT GCTCATTAAA TATATTTTCT TATGGCCTTT (2) TATTTTTAAA (3) TTTACTCTGC 56.5 0.0565 E14.5 retina CACTGATTTA CTCAATAAAC (2) GCTCAGAATC GCTCATTAAA TATATTTTCT TATATTTTTT (2) TATTTTTAAA (3) TTTACTCTGC 58.2 0.0582 E16.5 retina AAAAAAAATA (3) CACTGATTTA CTCAATAAAC (2) GCTCAGAATC GCTCATTAAA TATATTTTCT TATTTTTAAA (3) TATTTTTCAA (3) TCTCTATTAA TTTACTCTGC TTTTTATTAA (2) 74.1 0.0741 E18.5 retina AAAAAAAATA (3) CACTGATTTA CTCAATAAAC (2) GCTCAGAATC TATATTTTCT TATATTTTTT (2) TATTTTTAAA (3) 52.7 0.0527 P0.5 retina ATTCTGACAA CACTGATTTA CTCAATAAAC (2) TATTTTTAAA (3) TATTTTTCAA (3) TCTCTATTAA TTTTTATTAA (2) 57 0.057 P2.5 retina CACTGATTTA CAGCTTTTAA (2) CTCAATAAAC (2) CTGTTATCAT GCTCATTAAA TATATTTTCT TATTTTTAAA (3) TTTACTCTGC 81 0.081 P4.5 retina AAAAAAAATA (3) CACTGATTTA CTCAATAAAC (2) GCTCATTAAA TATATTTTCT TATTTTTAAA (3) TCTCTATTAA 73.4 0.0734 P6.5 retina CACTGATTTA CAGCTTTTAA (2) CCTGGAGTCT CTCAATAAAC (2) GCTCATTAAA TATATTTTCT TATTTTTAAA (3) TATTTTTCAA (3) 86.9 0.0869 P10.5 crx- retina CACTGATTTA CAGCTTTTAA (2) CTCAATAAAC (2) CTGTTATCAT GCTCATTAAA TATATTTTCT TATGGCCTTT (2) TATGTAATAT (2) TATTTTTAAA (3) TCTCTATTAA 63.3 0.0633 P10.5 crx+ retina CACTGATTTA CTCAATAAAC (2) CTGTTATCAT GCTCATTAAA TATATTTTCT TATGGCCTTT (2) TATTTTTAAA (3) TTTACTCTGC 72.9 0.0729 Adult retinal CACTGATTTA CCATCATCAG (4) CCTGGAGTCT TATGGCCTTT (2) TCTCTATTAA TTTACTCTGC TTTTTATTAA (2) 50.3 0.0503 ONL AAAAAAAATA (3) ATTCTGACAA CACTGATTTA CAGCTTTTAA (2) CCTGGAGTCT CTCAATAAAC (2) GCTCATTAAA TATATTTTCT TATGGCCTTT (2) TATTTTTAAA (3) TATTTTTCAA (3) TCTCTATTAA TTTACTCTGC 43.8 0.0438