Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.300263	Rpl28	ribosomal protein L28	7	7 4.0 cM	19943
Gene Ontology	cytosolic ribosome (sensu Eukarya) | intracellular | protein biosynthesis | ribosome | ribosome biogenesis | structural constituent of ribosome
Human Homolog	RPL28[ribosomal protein L28]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 100 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATCCGAAAGA (4) 71.8 0.0718 P8 Cb GC TCAAAAAAAA (60) 17.9 0.0179 P8 Cb GC AAAAAAACTA (2) 6.5 0.0065 P8 Cb GC TCCGCGCATC 3.3 0.0033 P8 Cb GC TGTCTGATGC 3.3 0.0033 Cb medulloblastoma TCAAAAAAAA (60) 99.4 0.0994 Cb medulloblastoma ATCCGAAAGA (4) 9.2 0.0092 Cb medulloblastoma GGGGAAATGG (9) 2.3 0.0023 Cb medulloblastoma GTCCGAAAGA (2) 2.3 0.0023 P8 GC+1d culture ATCCGAAAGA (4) 79.9 0.0799 P8 GC+1d culture TCAAAAAAAA (60) 17.1 0.0171 P8 GC+1d culture AAAAAAACTA (2) 8 0.008 P8 GC+1d culture TGTCTGATGC 5.7 0.0057 P8 GC+1d culture ACCCGAAAGA (2) 2.3 0.0023 P8 GC+1d culture ATCCGAAGGA 2.3 0.0023 P8 GC+1d culture GTCCGAAAGA (2) 2.3 0.0023 P8 GC+1d culture ATCCGAAAGC 1.1 0.0011 P8 GC+SHH+1d culture ATCCGAAAGA (4) 83.1 0.0831 P8 GC+SHH+1d culture TCAAAAAAAA (60) 51.5 0.0515 P8 GC+SHH+1d culture TGTCTGATGC 7 0.007 P8 GC+SHH+1d culture TCCGCGCATC 2.3 0.0023 P8 GC+SHH+1d culture AAAAAAACTA (2) 1.2 0.0012 3T3 fibroblasts ATCCGAAAGA (4) 94.6 0.0946 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 3T3 fibroblasts TGTCTGATGC 10.5 0.0105 3T3 fibroblasts TCAAAAAAAA (60) 7 0.007 E15 cortex ATCCGAAAGA (4) 64.3 0.0643 E15 cortex TCAAAAAAAA (60) 14.8 0.0148 E15 cortex GTCATAGCTG (590) 4.9 0.0049 P1 cortex ATCCGAAAGA (4) 77.3 0.0773 P1 cortex TCAAAAAAAA (60) 22.7 0.0227 P1 cortex ACCCGAAAGA (2) 4.5 0.0045 P1 cortex GGGGAAATGG (9) 4.5 0.0045 Hypothalamus TCAAAAAAAA (60) 39.8 0.0398 Hypothalamus ATCCGAAAGA (4) 36.2 0.0362 Hypothalamus TGTCTGATGC 3.6 0.0036 Hypothalamus ATCCGAGAAA (2) 1.8 0.0018 E12.5 retina ATCCGAAAGA (4) 103.3 0.1033 E12.5 retina TCAAAAAAAA (60) 18.8 0.0188 E12.5 retina AAAAAAACTA (2) 3.8 0.0038 E12.5 retina TGTCTGATGC 1.9 0.0019 E14.5 retina ATCCGAAAGA (4) 47.4 0.0474 E14.5 retina TCAAAAAAAA (60) 41.9 0.0419 E14.5 retina TGTCTGATGC 12.8 0.0128 E14.5 retina AAAAAAACTA (2) 3.6 0.0036 E16.5 retina ATCCGAAAGA (4) 58 0.058 E16.5 retina TCAAAAAAAA (60) 18.1 0.0181 E16.5 retina AAAAAAACTA (2) 7.2 0.0072 E16.5 retina TGTCTGATGC 5.4 0.0054 E16.5 retina ATCCGAAAGC 1.8 0.0018 E16.5 retina ATCCGAGAAA (2) 1.8 0.0018 E16.5 retina TCCGCGCATC 1.8 0.0018 E18.5 retina TCAAAAAAAA (60) 49.1 0.0491 E18.5 retina ATCCGAAAGA (4) 32.7 0.0327 E18.5 retina TACAAGACAA 3.6 0.0036 E18.5 retina TGTCTGATGC 3.6 0.0036 E18.5 retina ATCCGAAAGC 1.8 0.0018 P0.5 retina ATCCGAAAGA (4) 60.8 0.0608 P0.5 retina TCAAAAAAAA (60) 31.4 0.0314 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina TGTCTGATGC 3.9 0.0039 P0.5 retina GTCCGAAAGA (2) 2 0.002 P2.5 retina ATCCGAAAGA (4) 45.8 0.0458 P2.5 retina TCAAAAAAAA (60) 35.2 0.0352 P2.5 retina TGTCTGATGC 5.3 0.0053 P2.5 retina AAAAAAACTA (2) 1.8 0.0018 P2.5 retina ATCCGAGAAA (2) 1.8 0.0018 P2.5 retina GGGGAAATGG (9) 1.8 0.0018 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P2.5 retina GTCCGAAAGA (2) 1.8 0.0018 P2.5 retina TCCGCGCATC 1.8 0.0018 P4.5 retina ATCCGAAAGA (4) 37.6 0.0376 P4.5 retina TCAAAAAAAA (60) 37.6 0.0376 P4.5 retina AAAAAAACTA (2) 15.9 0.0159 P4.5 retina TGTCTGATGC 5.9 0.0059 P4.5 retina GTCATAGCTG (590) 2 0.002 P6.5 retina TCAAAAAAAA (60) 31.7 0.0317 P6.5 retina ATCCGAAAGA (4) 30 0.03 P6.5 retina AAAAAAACTA (2) 5 0.005 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina TGTCTGATGC 3.3 0.0033 P10.5 crx- retina ATCCGAAAGA (4) 42.7 0.0427 P10.5 crx- retina TCAAAAAAAA (60) 14.9 0.0149 P10.5 crx- retina GGGGAAATGG (9) 1.9 0.0019 P10.5 crx- retina TCCGCGCATC 1.9 0.0019 P10.5 crx- retina TGTCTGATGC 1.9 0.0019 P10.5 crx+ retina ATCCGAAAGA (4) 23.1 0.0231 P10.5 crx+ retina TCAAAAAAAA (60) 17.3 0.0173 P10.5 crx+ retina TGTCTGATGC 5.8 0.0058 Adult retinal ATCCGAAAGA (4) 24.1 0.0241 Adult retinal TCAAAAAAAA (60) 20.4 0.0204 Adult retinal AAAAAAACTA (2) 3.7 0.0037 Adult retinal ATCCGAAGGA 3.7 0.0037 Adult retinal GTCATAGCTG (590) 1.9 0.0019 Adult retinal TGTCTGATGC 1.9 0.0019 ONL ATCCGAAAGA (4) 26.8 0.0268 ONL TCAAAAAAAA (60) 15.3 0.0153 ONL GTCATAGCTG (590) 5.7 0.0057 ONL TACAAGACAA 3.8 0.0038 ONL AAAAAAACTA (2) 1.9 0.0019