Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.300271	Rpl9	ribosomal protein L9	5		20005
Gene Ontology	cytosolic ribosome (sensu Eukarya) | intracellular | protein biosynthesis | ribosome | ribosome biogenesis | RNA binding | structural constituent of ribosome
Human Homolog	RPL9[ribosomal protein L9]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 142 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AACAATTTGG (4) 215.3 0.2153 P8 Cb GC ATCAAGGGTG (4) 9.8 0.0098 P8 Cb GC GACAATTTGG (2) 6.5 0.0065 P8 Cb GC AACATTTTGG (5) 3.3 0.0033 P8 Cb GC TCTGCAGCTG (8) 3.3 0.0033 P8 Cb GC AACAATGTGG (3) 1.6 0.0016 P8 Cb GC AACAATTTTG (3) 1.6 0.0016 P8 Cb GC AACGATTTGG 1.6 0.0016 P8 Cb GC ATGGACTTTA (13) 1.6 0.0016 Cb medulloblastoma AACAATTTGG (4) 152.6 0.1526 Cb medulloblastoma TCTGCAGCTG (8) 9.2 0.0092 Cb medulloblastoma TGGTCAGGAT (2) 6.9 0.0069 Cb medulloblastoma GGGATGTATT (3) 4.6 0.0046 Cb medulloblastoma AACAATGTGG (3) 2.3 0.0023 Cb medulloblastoma AACTATTTGG (3) 2.3 0.0023 Cb medulloblastoma GCCTCCAATG (2) 2.3 0.0023 P8 GC+1d culture AACAATTTGG (4) 119.9 0.1199 P8 GC+1d culture GACAATTTGG (2) 4.6 0.0046 P8 GC+1d culture TCTGCAGCTG (8) 3.4 0.0034 P8 GC+1d culture ACTGCAGATG (2) 2.3 0.0023 P8 GC+1d culture ATGGACTTTA (13) 2.3 0.0023 P8 GC+1d culture CTTGGCTTCC (2) 2.3 0.0023 P8 GC+1d culture AGAAAGGAAG 1.1 0.0011 P8 GC+1d culture GCCTCCAATG (2) 1.1 0.0011 P8 GC+SHH+1d culture AACAATTTGG (4) 172.1 0.1721 P8 GC+SHH+1d culture GACAATTTGG (2) 3.5 0.0035 P8 GC+SHH+1d culture TCTGCAGCTG (8) 3.5 0.0035 P8 GC+SHH+1d culture TGGTCAGGAT (2) 3.5 0.0035 P8 GC+SHH+1d culture AACATTTTGG (5) 1.2 0.0012 P8 GC+SHH+1d culture AACTATTTGG (3) 1.2 0.0012 P8 GC+SHH+1d culture ACTGCAGATG (2) 1.2 0.0012 P8 GC+SHH+1d culture AGAAAGGAAG 1.2 0.0012 P8 GC+SHH+1d culture ATGGACTTTA (13) 1.2 0.0012 P8 GC+SHH+1d culture GCCTCCAATG (2) 1.2 0.0012 3T3 fibroblasts ACTGCAGATG (2) 17.5 0.0175 3T3 fibroblasts AACAATTTGG (4) 10.5 0.0105 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 3T3 fibroblasts TCTGCAGCTG (8) 10.5 0.0105 3T3 fibroblasts GCCTCCAATG (2) 3.5 0.0035 E15 cortex AACAATTTGG (4) 148.4 0.1484 E15 cortex AACAATTTTG (3) 4.9 0.0049 E15 cortex AACTATTTGG (3) 4.9 0.0049 E15 cortex GGGATGTATT (3) 4.9 0.0049 E15 cortex GTCATAGCTG (590) 4.9 0.0049 P1 cortex AACAATTTGG (4) 50 0.05 P1 cortex ACTGCAGATG (2) 4.5 0.0045 P1 cortex AGAAAGGAAG 4.5 0.0045 P1 cortex GGGATGTATT (3) 4.5 0.0045 P1 cortex TCTGCAGCTG (8) 4.5 0.0045 Hypothalamus AACAATTTGG (4) 110.5 0.1105 Hypothalamus TGGTCAGGAT (2) 12.7 0.0127 Hypothalamus ACTGCAGATG (2) 7.2 0.0072 Hypothalamus TCTGCAGCTG (8) 3.6 0.0036 Hypothalamus AACAATTGGG (2) 1.8 0.0018 Hypothalamus ATCAAGGGTG (4) 1.8 0.0018 E12.5 retina AACAATTTGG (4) 307.9 0.3079 E12.5 retina TCTGCAGCTG (8) 7.5 0.0075 E12.5 retina ATCAAGGGTG (4) 1.9 0.0019 E12.5 retina CTTGGCTTCC (2) 1.9 0.0019 E12.5 retina GACAATTTGG (2) 1.9 0.0019 E12.5 retina TGGTCAGGAT (2) 1.9 0.0019 E14.5 retina AACAATTTGG (4) 185.8 0.1858 E14.5 retina ACTGCAGATG (2) 12.8 0.0128 E14.5 retina TGGTCAGGAT (2) 12.8 0.0128 E14.5 retina AACGATTTGG 1.8 0.0018 E14.5 retina AACTATTTGG (3) 1.8 0.0018 E14.5 retina ATCAAGGGTG (4) 1.8 0.0018 E14.5 retina GACAATTTGG (2) 1.8 0.0018 E14.5 retina GGGATGTATT (3) 1.8 0.0018 E16.5 retina AACAATTTGG (4) 206.5 0.2065 E16.5 retina TGGTCAGGAT (2) 19.9 0.0199 E16.5 retina ATCAAGGGTG (4) 10.9 0.0109 E16.5 retina ACTGCAGATG (2) 7.2 0.0072 E16.5 retina TCTGCAGCTG (8) 5.4 0.0054 E16.5 retina AACAATTTTG (3) 1.8 0.0018 E16.5 retina CTTGGCTTCC (2) 1.8 0.0018 E18.5 retina AACAATTTGG (4) 245.6 0.2456 E18.5 retina TGGTCAGGAT (2) 18.2 0.0182 E18.5 retina TCTGCAGCTG (8) 7.3 0.0073 E18.5 retina AACAATTTTG (3) 3.6 0.0036 E18.5 retina ATCAAGGGTG (4) 1.8 0.0018 P0.5 retina AACAATTTGG (4) 184.5 0.1845 P0.5 retina ACTGCAGATG (2) 3.9 0.0039 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina TCTGCAGCTG (8) 3.9 0.0039 P0.5 retina AACAATTTTG (3) 2 0.002 P0.5 retina AACGATTTGG 2 0.002 P0.5 retina ATCAAGGGTG (4) 2 0.002 P0.5 retina CTTGGCTTCC (2) 2 0.002 P0.5 retina GACAATTTGG (2) 2 0.002 P0.5 retina TGGTCAGGAT (2) 2 0.002 P2.5 retina AACAATTTGG (4) 186.5 0.1865 P2.5 retina TCTGCAGCTG (8) 3.5 0.0035 P2.5 retina AGAAAGGAAG 1.8 0.0018 P2.5 retina ATCAAGGGTG (4) 1.8 0.0018 P2.5 retina ATGGACTTTA (13) 1.8 0.0018 P2.5 retina CTTGGCTTCC (2) 1.8 0.0018 P2.5 retina GACAATTTGG (2) 1.8 0.0018 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P2.5 retina TGGTCAGGAT (2) 1.8 0.0018 P4.5 retina AACAATTTGG (4) 180.3 0.1803 P4.5 retina AACAATTTTG (3) 5.9 0.0059 P4.5 retina TGGTCAGGAT (2) 5.9 0.0059 P4.5 retina TCTGCAGCTG (8) 4 0.004 P4.5 retina AACAATTGGG (2) 2 0.002 P4.5 retina AACGATTTGG 2 0.002 P4.5 retina AACTATTTGG (3) 2 0.002 P4.5 retina GTCATAGCTG (590) 2 0.002 P6.5 retina AACAATTTGG (4) 146.7 0.1467 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina AACAATTTTG (3) 1.7 0.0017 P6.5 retina ACTGCAGATG (2) 1.7 0.0017 P6.5 retina ATGGACTTTA (13) 1.7 0.0017 P6.5 retina TCTGCAGCTG (8) 1.7 0.0017 P6.5 retina TGGTCAGGAT (2) 1.7 0.0017 P10.5 crx- retina AACAATTTGG (4) 81.7 0.0817 P10.5 crx- retina TCTGCAGCTG (8) 11.1 0.0111 P10.5 crx- retina ATCAAGGGTG (4) 3.7 0.0037 P10.5 crx- retina AACAATGTGG (3) 1.9 0.0019 P10.5 crx- retina AACAATTGGG (2) 1.9 0.0019 P10.5 crx- retina AACTATTTGG (3) 1.9 0.0019 P10.5 crx- retina CTTGGCTTCC (2) 1.9 0.0019 P10.5 crx- retina TGGTCAGGAT (2) 1.9 0.0019 P10.5 crx+ retina AACAATTTGG (4) 125 0.125 P10.5 crx+ retina TCTGCAGCTG (8) 5.8 0.0058 P10.5 crx+ retina TGGTCAGGAT (2) 5.8 0.0058 Adult retinal AACAATTTGG (4) 88.9 0.0889 Adult retinal TCTGCAGCTG (8) 5.6 0.0056 Adult retinal CTTGGCTTCC (2) 3.7 0.0037 Adult retinal TGGTCAGGAT (2) 3.7 0.0037 Adult retinal AACAATTTTG (3) 1.9 0.0019 Adult retinal AACATTTTGG (5) 1.9 0.0019 Adult retinal ACTGCAGATG (2) 1.9 0.0019 Adult retinal GACAATTTGG (2) 1.9 0.0019 Adult retinal GCCTCCAATG (2) 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 ONL AACAATTTGG (4) 88.1 0.0881 ONL GTCATAGCTG (590) 5.7 0.0057 ONL AGAAAGGAAG 1.9 0.0019 ONL GCCTCCAATG (2) 1.9 0.0019 ONL TCTGCAGCTG (8) 1.9 0.0019 ONL TGGTCAGGAT (2) 1.9 0.0019