Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.301148	4921516M08Rik	RIKEN cDNA 4921516M08 gene	13		70889
Mm.301148	Taf9	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor	13		108143
Gene Ontology	DNA binding | general RNA polymerase II transcription factor activity | nucleus | protein C-terminus binding | regulation of transcription, DNA-dependent | transcription coactivator activity | transcription factor TFIID complex | transcription from Pol II promoter | transcription initiation
Human Homolog	TAF9[TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 63 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TTAGATGTTT (2) 14.7 0.0147 P8 Cb GC GTTATTTTGG (4) 11.4 0.0114 P8 Cb GC ATGATGATGA (16) 3.3 0.0033 Cb medulloblastoma GTTATTTTGG (4) 4.6 0.0046 Cb medulloblastoma TTAGATGTTT (2) 4.6 0.0046 Cb medulloblastoma ATGATGATGA (16) 2.3 0.0023 P8 GC+1d culture TTAGATGTTT (2) 8 0.008 P8 GC+1d culture GTTATTTTGG (4) 6.8 0.0068 P8 GC+1d culture ATGATGATGA (16) 1.1 0.0011 P8 GC+1d culture TCAGTTTACT (4) 1.1 0.0011 P8 GC+SHH+1d culture GTTATTTTGG (4) 18.7 0.0187 P8 GC+SHH+1d culture TTAGATGTTT (2) 9.4 0.0094 P8 GC+SHH+1d culture ATGATGATGA (16) 3.5 0.0035 3T3 fibroblasts GTTATTTTGG (4) 7 0.007 3T3 fibroblasts TACAGATTGC (3) 7 0.007 E15 cortex GTTATTTTGG (4) 9.9 0.0099 P1 cortex GTTATTTTGG (4) 9.1 0.0091 P1 cortex TTAGATGTTT (2) 9.1 0.0091 Hypothalamus TTAGATGTTT (2) 10.9 0.0109 Hypothalamus GTTATTTTGG (4) 1.8 0.0018 E12.5 retina GTTATTTTGG (4) 18.8 0.0188 E12.5 retina ATGATGATGA (16) 9.4 0.0094 E12.5 retina TTAGATGTTT (2) 3.8 0.0038 E12.5 retina CATCGTGGCT (3) 1.9 0.0019 E12.5 retina TCAGTTTACT (4) 1.9 0.0019 E14.5 retina TTAGATGTTT (2) 14.6 0.0146 E14.5 retina GTTATTTTGG (4) 10.9 0.0109 E14.5 retina ATGATGATGA (16) 3.6 0.0036 E16.5 retina GTTATTTTGG (4) 5.4 0.0054 E16.5 retina TTAGATGTTT (2) 5.4 0.0054 E16.5 retina ATGATGATGA (16) 3.6 0.0036 E16.5 retina CATCGTGGCT (3) 1.8 0.0018 E16.5 retina TCAGTTTACT (4) 1.8 0.0018 E18.5 retina GTTATTTTGG (4) 29.1 0.0291 E18.5 retina ATGATGATGA (16) 7.3 0.0073 E18.5 retina TTAGATGTTT (2) 5.5 0.0055 E18.5 retina TACAGATTGC (3) 1.8 0.0018 E18.5 retina TCAGTTTACT (4) 1.8 0.0018 P0.5 retina GTTATTTTGG (4) 19.6 0.0196 P0.5 retina ATGATGATGA (16) 9.8 0.0098 P0.5 retina TTAGATGTTT (2) 9.8 0.0098 P0.5 retina TCAGTTTACT (4) 3.9 0.0039 P2.5 retina GTTATTTTGG (4) 24.6 0.0246 P2.5 retina ATGATGATGA (16) 17.6 0.0176 P2.5 retina TTAGATGTTT (2) 7 0.007 P2.5 retina TCAGTTTACT (4) 3.5 0.0035 P2.5 retina CATCGTGGCT (3) 1.8 0.0018 P4.5 retina GTTATTTTGG (4) 13.9 0.0139 P4.5 retina TCAGTTTACT (4) 5.9 0.0059 P4.5 retina TTAGATGTTT (2) 4 0.004 P6.5 retina ATGATGATGA (16) 5 0.005 P6.5 retina GTTATTTTGG (4) 3.3 0.0033 P6.5 retina TTAGATGTTT (2) 1.7 0.0017 P10.5 crx- retina GTTATTTTGG (4) 14.9 0.0149 P10.5 crx- retina TTAGATGTTT (2) 5.6 0.0056 P10.5 crx+ retina TTAGATGTTT (2) 5.8 0.0058 P10.5 crx+ retina GTTATTTTGG (4) 3.8 0.0038 Adult retinal GTTATTTTGG (4) 3.7 0.0037 Adult retinal TACAGATTGC (3) 1.9 0.0019 Adult retinal TTAGATGTTT (2) 1.9 0.0019 ONL ATGATGATGA (16) 3.8 0.0038 ONL TTAGATGTTT (2) 3.8 0.0038 ONL GTTATTTTGG (4) 1.9 0.0019