Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.30158	Fads1	fatty acid desaturase 1	19		76267
Gene Ontology	fatty acid biosynthesis | fatty acid desaturation | linoleoyl-CoA desaturase activity | lipid biosynthesis | long-chain fatty acid biosynthesis | oxidoreductase activity
Human Homolog	FADS1[fatty acid desaturase 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 106 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTGTGTGGTG (6) 17.9 0.0179 P8 Cb GC TCTGTTTTTA (2) 6.5 0.0065 P8 Cb GC TCTGTCTTTA (2) 3.3 0.0033 P8 Cb GC CGCAGATTAT (8) 1.6 0.0016 P8 Cb GC GAACTGTGCT (3) 1.6 0.0016 Cb medulloblastoma GTGTGTGGTG (6) 13.9 0.0139 Cb medulloblastoma AAAGGAAAAA (15) 6.9 0.0069 Cb medulloblastoma TCTGTCTTTA (2) 4.6 0.0046 Cb medulloblastoma CAGAAAAGCT (7) 2.3 0.0023 Cb medulloblastoma TGCTCTGCCT (20) 2.3 0.0023 P8 GC+1d culture TGCTCTGCCT (20) 10.3 0.0103 P8 GC+1d culture CGCAGATTAT (8) 5.7 0.0057 P8 GC+1d culture GTGTGTGGTG (6) 5.7 0.0057 P8 GC+1d culture TCTGTCTTTA (2) 3.4 0.0034 P8 GC+1d culture AAGGCCAACC (3) 1.1 0.0011 P8 GC+1d culture CAGAAAAGCT (7) 1.1 0.0011 P8 GC+1d culture GAACTGTGCT (3) 1.1 0.0011 P8 GC+1d culture GAAGCTAGAG (3) 1.1 0.0011 P8 GC+1d culture TCACAAACAG (2) 1.1 0.0011 P8 GC+1d culture TCTGTTTTTA (2) 1.1 0.0011 P8 GC+SHH+1d culture GTGTGTGGTG (6) 19.9 0.0199 P8 GC+SHH+1d culture TGCTCTGCCT (20) 9.4 0.0094 P8 GC+SHH+1d culture TCTGTCTTTA (2) 7 0.007 P8 GC+SHH+1d culture AAAGGAAAAA (15) 1.2 0.0012 P8 GC+SHH+1d culture CGCAGATTAT (8) 1.2 0.0012 P8 GC+SHH+1d culture GAACTGTGCT (3) 1.2 0.0012 P8 GC+SHH+1d culture GAAGCTAGAG (3) 1.2 0.0012 3T3 fibroblasts GTGTGTGGTG (6) 21 0.021 3T3 fibroblasts TGCTCTGCCT (20) 3.5 0.0035 E15 cortex GTGTGTGGTG (6) 24.7 0.0247 E15 cortex AAAGGAAAAA (15) 4.9 0.0049 E15 cortex TGCTCTGCCT (20) 4.9 0.0049 P1 cortex TGCTCTGCCT (20) 22.7 0.0227 P1 cortex GTGTGTGGTG (6) 9.1 0.0091 P1 cortex TCTGTCTTTT 9.1 0.0091 P1 cortex CAAGCTAAAT 4.5 0.0045 P1 cortex GAAGCTAGAG (3) 4.5 0.0045 P1 cortex TCTGTTTTTA (2) 4.5 0.0045 Hypothalamus AAGGCCAACC (3) 16.3 0.0163 Hypothalamus GTGTGTGGTG (6) 7.2 0.0072 Hypothalamus TGCTCTGCCT (20) 7.2 0.0072 Hypothalamus TCTGTCTTTA (2) 5.4 0.0054 Hypothalamus AAAGGAAAAA (15) 1.8 0.0018 Hypothalamus CAGAAAAGCT (7) 1.8 0.0018 Hypothalamus CGCAGATTAT (8) 1.8 0.0018 E12.5 retina GTGTGTGGTG (6) 11.3 0.0113 E12.5 retina GAACTGTGCT (3) 1.9 0.0019 E12.5 retina TGCTCTGCCT (20) 1.9 0.0019 E14.5 retina CGCAGATTAT (8) 9.1 0.0091 E14.5 retina GTGTGTGGTG (6) 9.1 0.0091 E14.5 retina TCTGTTTTTA (2) 9.1 0.0091 E14.5 retina TCTGTCTTTA (2) 3.6 0.0036 E14.5 retina GAAGCTAGAG (3) 1.8 0.0018 E14.5 retina TGCTCTGCCT (20) 1.8 0.0018 E16.5 retina TCTGTCTTTA (2) 9.1 0.0091 E16.5 retina GTGTGTGGTG (6) 7.2 0.0072 E16.5 retina TCTGTTTTTA (2) 7.2 0.0072 E16.5 retina TCACAAACAG (2) 3.6 0.0036 E16.5 retina TGCTCTGCCT (20) 3.6 0.0036 E16.5 retina AAAGGAAAAA (15) 1.8 0.0018 E16.5 retina CAAGCTAAAT 1.8 0.0018 E18.5 retina GTGTGTGGTG (6) 9.1 0.0091 E18.5 retina TGCTCTGCCT (20) 5.5 0.0055 E18.5 retina AAAGGAAAAA (15) 3.6 0.0036 E18.5 retina TCTGTCTTTA (2) 3.6 0.0036 E18.5 retina CGCAGATTAT (8) 1.8 0.0018 E18.5 retina GAAGCTAGAG (3) 1.8 0.0018 E18.5 retina TCTGTTTTTA (2) 1.8 0.0018 P0.5 retina GTGTGTGGTG (6) 9.8 0.0098 P0.5 retina TGCTCTGCCT (20) 3.9 0.0039 P2.5 retina GTGTGTGGTG (6) 15.8 0.0158 P2.5 retina TCTGTTTTTA (2) 10.6 0.0106 P2.5 retina TGCTCTGCCT (20) 10.6 0.0106 P2.5 retina CAAGCTAAAT 1.8 0.0018 P2.5 retina CGCAGATTAT (8) 1.8 0.0018 P4.5 retina GTGTGTGGTG (6) 13.9 0.0139 P4.5 retina TGCTCTGCCT (20) 9.9 0.0099 P4.5 retina AAAGGAAAAA (15) 4 0.004 P4.5 retina AAGGCCAACC (3) 2 0.002 P4.5 retina CGCAGATTAT (8) 2 0.002 P4.5 retina TCTGTTTTTA (2) 2 0.002 P6.5 retina GTGTGTGGTG (6) 18.3 0.0183 P6.5 retina TCTGTTTTTA (2) 3.3 0.0033 P6.5 retina TGCTCTGCCT (20) 3.3 0.0033 P6.5 retina CGCAGATTAT (8) 1.7 0.0017 P6.5 retina TCTGTCTTTA (2) 1.7 0.0017 P6.5 retina TCTGTCTTTT 1.7 0.0017 P10.5 crx- retina GTGTGTGGTG (6) 13 0.013 P10.5 crx- retina TCTGTTTTTA (2) 7.4 0.0074 P10.5 crx- retina TCTGTCTTTA (2) 3.7 0.0037 P10.5 crx- retina TGCTCTGCCT (20) 3.7 0.0037 P10.5 crx- retina TCTGTCTTTT 1.9 0.0019 P10.5 crx+ retina GTGTGTGGTG (6) 28.8 0.0288 P10.5 crx+ retina TGCTCTGCCT (20) 23.1 0.0231 P10.5 crx+ retina TCTGTCTTTT 5.8 0.0058 P10.5 crx+ retina CGCAGATTAT (8) 3.8 0.0038 P10.5 crx+ retina AAAGGAAAAA (15) 1.9 0.0019 P10.5 crx+ retina GAACTGTGCT (3) 1.9 0.0019 Adult retinal TGCTCTGCCT (20) 16.7 0.0167 Adult retinal GTGTGTGGTG (6) 11.1 0.0111 Adult retinal TCTGTCTTTT 5.6 0.0056 Adult retinal CAGAAAAGCT (7) 1.9 0.0019 Adult retinal TCTGTTTTTA (2) 1.9 0.0019 ONL GTGTGTGGTG (6) 5.7 0.0057 ONL CAGAAAAGCT (7) 1.9 0.0019 ONL TCTGTCTTTT 1.9 0.0019