Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.305152	Apoe	apolipoprotein E	7	7 4.0 cM	11816
Gene Ontology	extracellular | extracellular space | heparin binding | lipid binding | lipid transport | lipid transporter activity | lipoprotein metabolism
Human Homolog	APOE[apolipoprotein E] | APOE[apolipoprotein E]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 94 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CATCGCCAGT CTGGGCCAGA GAGGAGGTGC (2) GAGGAGGTGG (2) GAGGATCTAC (2) TATCGCCAGT TGCTCACGCA 44.1 0.0441 Cb medulloblastoma CATCGCCAGT GAGGAGGTGC (2) GAGGATCTAC (2) 62.4 0.0624 P8 GC+1d culture CATCGCCAGT CTGGGCCAGA CTGGGCCAGG GAGGAGGTGC (2) TCGGCTCCGA TGCTGCATCA 23.8 0.0238 P8 GC+SHH+1d culture CATCGCCAGT GAGGAGGTGC (2) TGCTCACGCA 16.5 0.0165 3T3 fibroblasts CTTGGGCAGA 3.5 0.0035 E15 cortex CATCGCCAGT CTGGGCCAGA 9.8 0.0098 P1 cortex CATCGCCAGG CATCGCCAGT 22.7 0.0227 Hypothalamus ACCCAGCAAA CATCGCCAGT CTGGGCCAAA CTGGGCCAGA GAGGAGGTGC (2) GAGGAGGTGG (2) TCGGCTCCGA TCTTCCACTA TGCTCACGCA 121.3 0.1213 E12.5 retina CATCGCCAGG CATCGCCAGT GGGAGGGGGC (2) TCGGCTCCGA TGCTCACGCA 15.1 0.0151 E14.5 retina CATCGCCAGT GAGGAGGTGG (2) 3.6 0.0036 E16.5 retina CATCGCCAGT GAGGAGGTGG (2) TCGGCTCCGA TGCTCACGCA TGCTGCATCA 12.6 0.0126 E18.5 retina CATCGCCAGT CTGGGCCAGA CTGGGCCAGG 7.2 0.0072 P0.5 retina CATCGCCAGT TGCTCACGCA 7.9 0.0079 P2.5 retina ACCCAGCAAA CATCGCCAGT CTGGGCCAAA CTGGGCCAGG GAGGAGGGGC (3) GAGGAGGTGC (2) GCCGTCGTGT (2) GGGAGGGGGC (2) TGCTCACGCA 19.7 0.0197 P4.5 retina CATCGCCAGT GCCGTCGTGT (2) GGGAGGGGGC (2) TATCGCCAGT TGCTGCATCA 35.7 0.0357 P6.5 retina ACCCAGCAAA CATCGCCAGT CTGGGCCAAA CTGGGCCAGA GAGGAGGGGC (3) TCGGCTCCGA TGCTCACGCA 46.7 0.0467 P10.5 crx- retina ACCCAGCAAA CATCGCCAGG CATCGCCAGT CTGGGCCAGA TCGGCTCCGA TGCTCACGCA 74.4 0.0744 P10.5 crx+ retina CATCGCCAGT CTTGGGCAGA GAGGAGGGGC (3) GCCGTCGTGT (2) 36.5 0.0365 Adult retinal ACATTCAACT CATCGCCAGG CATCGCCAGT CTGGGCCAGG GAGGAGGTGC (2) GAGGAGGTGG (2) TCGGCTCCGA TGCTCACGCA 61.4 0.0614 ONL ACATTCAACT CATCGCCAGT CTGGGCCAGA CTTGGGCAGA GGGAGGGGGC (2) 15.2 0.0152