Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.305750	Rpl27a	ribosomal protein L27a	7	7 51.55 cM	26451
Gene Ontology	intracellular | protein biosynthesis | ribosome | structural constituent of ribosome
Human Homolog	RPL27A[ribosomal protein L27a]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 122 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CACCACCACA 55.5 0.0555 P8 Cb GC GCGGTGGCAG 17.9 0.0179 P8 Cb GC CGGCAAAAAA (2) 4.9 0.0049 P8 Cb GC GAAAACTTAA (2) 4.9 0.0049 P8 Cb GC CCTACCTGCA (3) 3.3 0.0033 P8 Cb GC CCTCCAGCAT 3.3 0.0033 P8 Cb GC TTGGAAATCT (4) 1.6 0.0016 Cb medulloblastoma GCGGTGGCAG 16.2 0.0162 Cb medulloblastoma CACCACCACA 9.2 0.0092 Cb medulloblastoma CCTACCTGCA (3) 6.9 0.0069 Cb medulloblastoma CGGCAAAAAA (2) 6.9 0.0069 Cb medulloblastoma GAAAACTTAA (2) 4.6 0.0046 Cb medulloblastoma GAAAATGTTA 2.3 0.0023 Cb medulloblastoma TGGCAAAAAA (3) 2.3 0.0023 P8 GC+1d culture CACCACCACA 50.2 0.0502 P8 GC+1d culture CGGCAAAAAA (2) 9.1 0.0091 P8 GC+1d culture GCGGTGGCAG 6.8 0.0068 P8 GC+1d culture CCTACCTGCA (3) 3.4 0.0034 P8 GC+1d culture TGGTCTTTGC 1.1 0.0011 P8 GC+SHH+1d culture CACCACCACA 30.4 0.0304 P8 GC+SHH+1d culture GCGGTGGCAG 10.5 0.0105 P8 GC+SHH+1d culture TGGCAAAAAA (3) 5.9 0.0059 P8 GC+SHH+1d culture CGGCAAAAAA (2) 4.7 0.0047 P8 GC+SHH+1d culture CCTACCTGCA (3) 2.3 0.0023 P8 GC+SHH+1d culture GAAAACTTAA (2) 2.3 0.0023 P8 GC+SHH+1d culture CCTCCAGCAT 1.2 0.0012 P8 GC+SHH+1d culture GAAAATGTTA 1.2 0.0012 3T3 fibroblasts CACCACCACA 287.4 0.2874 3T3 fibroblasts CCTACCTGCA (3) 7 0.007 3T3 fibroblasts CCTCCAGCAT 3.5 0.0035 3T3 fibroblasts GCGGTGGCAG 3.5 0.0035 E15 cortex CACCACCACA 34.6 0.0346 E15 cortex CGGCAAAAAA (2) 4.9 0.0049 P1 cortex CACCACCACA 27.3 0.0273 P1 cortex CCTACCTGCA (3) 4.5 0.0045 P1 cortex GAAAATGTTA 4.5 0.0045 Hypothalamus CACCACCACA 18.1 0.0181 Hypothalamus GAAAACTTAA (2) 12.7 0.0127 Hypothalamus CCTCCAGCAT 5.4 0.0054 Hypothalamus CGGCAAAAAA (2) 3.6 0.0036 Hypothalamus GAAAATGTTA 3.6 0.0036 Hypothalamus GCGGTGGCAG 3.6 0.0036 Hypothalamus CCTACCTGCA (3) 1.8 0.0018 Hypothalamus TGGCAAAAAA (3) 1.8 0.0018 Hypothalamus TTGGAAATCT (4) 1.8 0.0018 E12.5 retina CACCACCACA 41.3 0.0413 E12.5 retina GCGGTGGCAG 16.9 0.0169 E12.5 retina CCTACCTGCA (3) 7.5 0.0075 E12.5 retina GAAAACTTAA (2) 5.6 0.0056 E12.5 retina CCTCCAGCAT 1.9 0.0019 E12.5 retina CGGCAAAAAA (2) 1.9 0.0019 E12.5 retina GAAAATGTTA 1.9 0.0019 E12.5 retina TGGTCTTTGC 1.9 0.0019 E12.5 retina TTGGAAATCT (4) 1.9 0.0019 E14.5 retina CACCACCACA 9.1 0.0091 E14.5 retina CCTACCTGCA (3) 5.5 0.0055 E14.5 retina GAAAACTTAA (2) 5.5 0.0055 E14.5 retina GAAAATGTTA 5.5 0.0055 E14.5 retina GCGGTGGCAG 5.5 0.0055 E14.5 retina CGGCAAAAAA (2) 3.6 0.0036 E16.5 retina CACCACCACA 18.1 0.0181 E16.5 retina GAAAATGTTA 10.9 0.0109 E16.5 retina GAAAACTTAA (2) 9.1 0.0091 E16.5 retina CCTACCTGCA (3) 3.6 0.0036 E16.5 retina CGGCAAAAAA (2) 3.6 0.0036 E16.5 retina GCGGTGGCAG 3.6 0.0036 E16.5 retina TGGCAAAAAA (3) 3.6 0.0036 E16.5 retina TTGGAAATCT (4) 1.8 0.0018 E18.5 retina CACCACCACA 23.6 0.0236 E18.5 retina GAAAACTTAA (2) 10.9 0.0109 E18.5 retina GCGGTGGCAG 10.9 0.0109 E18.5 retina CCTCCAGCAT 9.1 0.0091 E18.5 retina CGGCAAAAAA (2) 7.3 0.0073 E18.5 retina TGGCAAAAAA (3) 5.5 0.0055 E18.5 retina CCTACCTGCA (3) 3.6 0.0036 E18.5 retina TGGTCTTTGC 1.8 0.0018 E18.5 retina TTGGAAATCT (4) 1.8 0.0018 P0.5 retina CACCACCACA 41.2 0.0412 P0.5 retina GCGGTGGCAG 15.7 0.0157 P0.5 retina CCTACCTGCA (3) 5.9 0.0059 P0.5 retina CCTCCAGCAT 3.9 0.0039 P0.5 retina CGGCAAAAAA (2) 3.9 0.0039 P0.5 retina GAAAACTTAA (2) 3.9 0.0039 P0.5 retina TGGCAAAAAA (3) 2 0.002 P2.5 retina CACCACCACA 24.6 0.0246 P2.5 retina GAAAACTTAA (2) 7 0.007 P2.5 retina GCGGTGGCAG 5.3 0.0053 P2.5 retina GAAAATGTTA 3.5 0.0035 P2.5 retina CGGCAAAAAA (2) 1.8 0.0018 P2.5 retina TGGCAAAAAA (3) 1.8 0.0018 P4.5 retina CACCACCACA 25.8 0.0258 P4.5 retina GAAAACTTAA (2) 9.9 0.0099 P4.5 retina CGGCAAAAAA (2) 7.9 0.0079 P4.5 retina GCGGTGGCAG 5.9 0.0059 P4.5 retina GAAAATGTTA 4 0.004 P4.5 retina TGGCAAAAAA (3) 4 0.004 P4.5 retina CCTACCTGCA (3) 2 0.002 P6.5 retina CACCACCACA 28.3 0.0283 P6.5 retina CGGCAAAAAA (2) 10 0.01 P6.5 retina GCGGTGGCAG 5 0.005 P6.5 retina CCTACCTGCA (3) 1.7 0.0017 P6.5 retina GAAAACTTAA (2) 1.7 0.0017 P6.5 retina TTGGAAATCT (4) 1.7 0.0017 P10.5 crx- retina CACCACCACA 13 0.013 P10.5 crx- retina GAAAATGTTA 5.6 0.0056 P10.5 crx- retina CCTACCTGCA (3) 3.7 0.0037 P10.5 crx- retina CGGCAAAAAA (2) 1.9 0.0019 P10.5 crx- retina TTGGAAATCT (4) 1.9 0.0019 P10.5 crx+ retina CACCACCACA 17.3 0.0173 P10.5 crx+ retina CGGCAAAAAA (2) 5.8 0.0058 P10.5 crx+ retina GCGGTGGCAG 5.8 0.0058 P10.5 crx+ retina GAAAACTTAA (2) 3.8 0.0038 P10.5 crx+ retina CCTACCTGCA (3) 1.9 0.0019 P10.5 crx+ retina GAAAATGTTA 1.9 0.0019 P10.5 crx+ retina TGGTCTTTGC 1.9 0.0019 Adult retinal CACCACCACA 13 0.013 Adult retinal CCTACCTGCA (3) 3.7 0.0037 Adult retinal CGGCAAAAAA (2) 1.9 0.0019 Adult retinal GCGGTGGCAG 1.9 0.0019 ONL CACCACCACA 23 0.023 ONL GCGGTGGCAG 1.9 0.0019 ONL TGGCAAAAAA (3) 1.9 0.0019