Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.30837
Ndrg1
N-myc downstream regulated gene 1
15
15 D2
17988
Mm.30837
Ndrl
N-myc downstream regulated-like
15
17990
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
Total 7 In Situ Hybridization Images
Images -- Click to Enlarge
SAGE Tags
Total 106 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
GCTGGTGGAC (
3
)
11.4
0.0114
P8 Cb GC
AATGTGAACA (
5
)
6.5
0.0065
P8 Cb GC
AGAGACAAGG
(
5
)
1.6
0.0016
P8 Cb GC
CTTCCTGGAG (
6
)
1.6
0.0016
P8 Cb GC
GAGGTGTCCT
(
2
)
1.6
0.0016
P8 Cb GC
GGACAGGACT (
6
)
1.6
0.0016
Cb medulloblastoma
GCTGGTGGAC (
3
)
9.2
0.0092
Cb medulloblastoma
GAGGTGACTG (
7
)
4.6
0.0046
Cb medulloblastoma
AATGTGAACA (
5
)
2.3
0.0023
Cb medulloblastoma
AGAGACAAGG
(
5
)
2.3
0.0023
Cb medulloblastoma
GGCATTAGGC
(
3
)
2.3
0.0023
P8 GC+1d culture
AATGTGAACA (
5
)
17.1
0.0171
P8 GC+1d culture
GCTGGTGGAC (
3
)
13.7
0.0137
P8 GC+1d culture
GGACAGGACT (
6
)
2.3
0.0023
P8 GC+1d culture
CTTCCTGGAG (
6
)
1.1
0.0011
P8 GC+1d culture
GCGGCCCAGT
(
2
)
1.1
0.0011
P8 GC+1d culture
TTTGAAACTT (
4
)
1.1
0.0011
P8 GC+SHH+1d culture
GCTGGTGGAC (
3
)
12.9
0.0129
P8 GC+SHH+1d culture
AATGTGAACA (
5
)
7
0.007
P8 GC+SHH+1d culture
AGAGACAAGG
(
5
)
3.5
0.0035
3T3 fibroblasts
AGAGACAAGG
(
5
)
3.5
0.0035
3T3 fibroblasts
CTTCCTGGAG (
6
)
3.5
0.0035
3T3 fibroblasts
GAGGTGTCCT
(
2
)
3.5
0.0035
E15 cortex
GCGGCCCAGT
(
2
)
4.9
0.0049
E15 cortex
GCTGGTGGAC (
3
)
4.9
0.0049
P1 cortex
AGAGACAAGG
(
5
)
4.5
0.0045
P1 cortex
GCTGGTGGAC (
3
)
4.5
0.0045
Hypothalamus
AGAGACAAGG
(
5
)
7.2
0.0072
Hypothalamus
AATGTGAACA (
5
)
1.8
0.0018
Hypothalamus
AGAGACAGGG (
9
)
1.8
0.0018
Hypothalamus
GGCATTAGGC
(
3
)
1.8
0.0018
E12.5 retina
GCTGGTGGAC (
3
)
11.3
0.0113
E12.5 retina
AAACAAAAGA (
8
)
1.9
0.0019
E12.5 retina
AATGTGAACA (
5
)
1.9
0.0019
E14.5 retina
GCTGGTGGAC (
3
)
16.4
0.0164
E14.5 retina
AAACAAAAGA (
8
)
1.8
0.0018
E14.5 retina
AGAGACAAGG
(
5
)
1.8
0.0018
E14.5 retina
GAGGTGACTG (
7
)
1.8
0.0018
E14.5 retina
GCGGCCCAGT
(
2
)
1.8
0.0018
E14.5 retina
GGCATTAGGC
(
3
)
1.8
0.0018
E14.5 retina
GGCTCCTTAG (
4
)
1.8
0.0018
E14.5 retina
GGGACACAGA (
6
)
1.8
0.0018
E14.5 retina
GTGACAGGAG (
3
)
1.8
0.0018
E14.5 retina
TTTGAAACTT (
4
)
1.8
0.0018
E16.5 retina
AGAGACAAGG
(
5
)
10.9
0.0109
E16.5 retina
GCTGGTGGAC (
3
)
9.1
0.0091
E16.5 retina
GGCTCCTTAG (
4
)
1.8
0.0018
E16.5 retina
GTGACAGGAG (
3
)
1.8
0.0018
E18.5 retina
GCTGGTGGAC (
3
)
12.7
0.0127
E18.5 retina
AGAGACAAGG
(
5
)
5.5
0.0055
E18.5 retina
AAACAAAAGA (
8
)
1.8
0.0018
E18.5 retina
CCGCCTATAG
(
2
)
1.8
0.0018
E18.5 retina
CTTCCTGGAG (
6
)
1.8
0.0018
E18.5 retina
GTGACAGGAG (
3
)
1.8
0.0018
E18.5 retina
TTTGAAACTT (
4
)
1.8
0.0018
P0.5 retina
AGAGACAAGG
(
5
)
19.6
0.0196
P0.5 retina
GCTGGTGGAC (
3
)
11.8
0.0118
P0.5 retina
GTGACAGGAG (
3
)
2
0.002
P2.5 retina
AGAGACAAGG
(
5
)
19.4
0.0194
P2.5 retina
GCTGGTGGAC (
3
)
15.8
0.0158
P2.5 retina
TGAACCCCCT (
3
)
5.3
0.0053
P2.5 retina
CCGCCTATAG
(
2
)
3.5
0.0035
P2.5 retina
ATAGACAAGG
(
2
)
1.8
0.0018
P2.5 retina
GGACAGGACT (
6
)
1.8
0.0018
P2.5 retina
GGGACAGAAG (
4
)
1.8
0.0018
P2.5 retina
TTTGAAACTT (
4
)
1.8
0.0018
P4.5 retina
AGAGACAAGG
(
5
)
23.8
0.0238
P4.5 retina
GCTGGTGGAC (
3
)
9.9
0.0099
P4.5 retina
CCGCCTATAG
(
2
)
5.9
0.0059
P4.5 retina
ATAGACAAGG
(
2
)
2
0.002
P4.5 retina
GGCTCCTTAG (
4
)
2
0.002
P4.5 retina
GGGACACAGA (
6
)
2
0.002
P6.5 retina
AGAGACAAGG
(
5
)
41.7
0.0417
P6.5 retina
GCTGGTGGAC (
3
)
13.3
0.0133
P6.5 retina
CCGCCTATAG
(
2
)
8.3
0.0083
P6.5 retina
GGACAGGACT (
6
)
5
0.005
P6.5 retina
GGCATTAGGC
(
3
)
1.7
0.0017
P6.5 retina
GGGACACAGA (
6
)
1.7
0.0017
P10.5 crx- retina
AGAGACAAGG
(
5
)
52
0.052
P10.5 crx- retina
GCTGGTGGAC (
3
)
11.1
0.0111
P10.5 crx- retina
GGACAGGACT (
6
)
3.7
0.0037
P10.5 crx- retina
AGAGACAGGG (
9
)
1.9
0.0019
P10.5 crx- retina
CCGCCTATAG
(
2
)
1.9
0.0019
P10.5 crx- retina
CTTCCTGGAG (
6
)
1.9
0.0019
P10.5 crx- retina
GAGGTGTCCT
(
2
)
1.9
0.0019
P10.5 crx- retina
GGCATTAGGC
(
3
)
1.9
0.0019
P10.5 crx+ retina
AGAGACAAGG
(
5
)
15.4
0.0154
P10.5 crx+ retina
GCTGGTGGAC (
3
)
9.6
0.0096
P10.5 crx+ retina
GAGGTGTCCT
(
2
)
1.9
0.0019
Adult retinal
GGACAGGACT (
6
)
13
0.013
Adult retinal
AGAGACAAGG
(
5
)
7.4
0.0074
Adult retinal
GCTGGTGGAC (
3
)
3.7
0.0037
Adult retinal
GGGACAAGAG
(
2
)
3.7
0.0037
Adult retinal
GGGACAGAAG (
4
)
3.7
0.0037
Adult retinal
AGAGACAGGG (
9
)
1.9
0.0019
Adult retinal
CCGCCTATAG
(
2
)
1.9
0.0019
Adult retinal
CTTCCTGGAG (
6
)
1.9
0.0019
Adult retinal
GAGGTGACTG (
7
)
1.9
0.0019
Adult retinal
GAGGTGTCCT
(
2
)
1.9
0.0019
ONL
AGAGACAAGG
(
5
)
13.4
0.0134
ONL
GGGACAGAAG (
4
)
7.7
0.0077
ONL
GGACAGGACT (
6
)
3.8
0.0038
ONL
ATAGACAAGG
(
2
)
1.9
0.0019
ONL
GCTGGTGGAC (
3
)
1.9
0.0019
ONL
GGCATTAGGC
(
3
)
1.9
0.0019
ONL
GGGACAAGAG
(
2
)
1.9
0.0019
