Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.31102	C76554	expressed sequence C76554	2		96951
Mm.31102	Upf2	UPF2 regulator of nonsense transcripts homolog (yeast)	2		326622
Gene Ontology	cytoplasm | protein binding | response to unfolded protein
Human Homolog	UPF2[UPF2 regulator of nonsense transcripts homolog (yeast)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 40 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATGGCTCACA (25) 11.4 0.0114 P8 Cb GC TGGTTGCCGG (6) 1.6 0.0016 Cb medulloblastoma ATGGCTCACA (25) 20.8 0.0208 Cb medulloblastoma TGGTTGCCGG (6) 2.3 0.0023 P8 GC+1d culture ATGGCTCACA (25) 33.1 0.0331 P8 GC+1d culture TGGTTGCCGG (6) 1.1 0.0011 P8 GC+SHH+1d culture ATGGCTCACA (25) 25.8 0.0258 3T3 fibroblasts ATGGCTCACA (25) 31.5 0.0315 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 E15 cortex ATGGCTCACA (25) 29.7 0.0297 E15 cortex TGGTTGCCGG (6) 14.8 0.0148 E15 cortex GTCATAGCTG (590) 4.9 0.0049 P1 cortex ATGGCTCACA (25) 13.6 0.0136 P1 cortex TGGTTGCCGG (6) 4.5 0.0045 Hypothalamus ATGGCTCACA (25) 43.5 0.0435 Hypothalamus TGGTTGCCGG (6) 5.4 0.0054 E12.5 retina ATGGCTCACA (25) 48.8 0.0488 E12.5 retina TGGTTGCCGG (6) 1.9 0.0019 E14.5 retina ATGGCTCACA (25) 47.4 0.0474 E14.5 retina TGGTTGCCGG (6) 3.6 0.0036 E16.5 retina ATGGCTCACA (25) 58 0.058 E16.5 retina TGGTTGCCGG (6) 7.2 0.0072 E18.5 retina ATGGCTCACA (25) 38.2 0.0382 P0.5 retina ATGGCTCACA (25) 35.3 0.0353 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P2.5 retina ATGGCTCACA (25) 31.7 0.0317 P2.5 retina TGGTTGCCGG (6) 3.5 0.0035 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P4.5 retina ATGGCTCACA (25) 23.8 0.0238 P4.5 retina GTCATAGCTG (590) 2 0.002 P6.5 retina ATGGCTCACA (25) 55 0.055 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P10.5 crx- retina ATGGCTCACA (25) 44.6 0.0446 P10.5 crx- retina TGGTTGCCGG (6) 3.7 0.0037 P10.5 crx+ retina ATGGCTCACA (25) 44.2 0.0442 P10.5 crx+ retina TGGTTGCCGG (6) 1.9 0.0019 Adult retinal ATGGCTCACA (25) 33.3 0.0333 Adult retinal GTCATAGCTG (590) 1.9 0.0019 ONL ATGGCTCACA (25) 49.8 0.0498 ONL GTCATAGCTG (590) 5.7 0.0057