Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.31263
A130042O14Rik
RIKEN cDNA A130042O14 gene
2
319986
Mm.31263
B230118H07Rik
RIKEN cDNA B230118H07 gene
2
2 E2
68170
Human Homolog
LOC119710[hypothetical protein BC009561]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
Total 11 In Situ Hybridization Images
Images -- Click to Enlarge
SAGE Tags
Total 37 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
TAAAAAAAAA (
196
)
47.3
0.0473
P8 Cb GC
ACTGATGTCT
(
2
)
13.1
0.0131
Cb medulloblastoma
TAAAAAAAAA (
196
)
106.4
0.1064
Cb medulloblastoma
ACTGATGTCT
(
2
)
6.9
0.0069
P8 GC+1d culture
TAAAAAAAAA (
196
)
66.2
0.0662
P8 GC+1d culture
ACTGATGTCT
(
2
)
8
0.008
P8 GC+SHH+1d culture
TAAAAAAAAA (
196
)
93.7
0.0937
P8 GC+SHH+1d culture
ACTGATGTCT
(
2
)
5.9
0.0059
3T3 fibroblasts
TAAAAAAAAA (
196
)
7
0.007
E15 cortex
TAAAAAAAAA (
196
)
9.9
0.0099
P1 cortex
TAAAAAAAAA (
196
)
50
0.05
Hypothalamus
TAAAAAAAAA (
196
)
32.6
0.0326
Hypothalamus
ACTGATGTCT
(
2
)
7.2
0.0072
E12.5 retina
TAAAAAAAAA (
196
)
24.4
0.0244
E12.5 retina
ACTGATGTCT
(
2
)
5.6
0.0056
E14.5 retina
TAAAAAAAAA (
196
)
41.9
0.0419
E14.5 retina
ACTGATGTCT
(
2
)
5.5
0.0055
E16.5 retina
TAAAAAAAAA (
196
)
23.5
0.0235
E16.5 retina
ACTGATGTCT
(
2
)
18.1
0.0181
E18.5 retina
TAAAAAAAAA (
196
)
107.3
0.1073
E18.5 retina
ACTGATGTCT
(
2
)
16.4
0.0164
E18.5 retina
GTCATAATCA
(
3
)
1.8
0.0018
P0.5 retina
TAAAAAAAAA (
196
)
37.3
0.0373
P0.5 retina
ACTGATGTCT
(
2
)
23.6
0.0236
P2.5 retina
TAAAAAAAAA (
196
)
72.2
0.0722
P2.5 retina
GTCATAATCA
(
3
)
1.8
0.0018
P4.5 retina
TAAAAAAAAA (
196
)
122.8
0.1228
P4.5 retina
ACTGATGTCT
(
2
)
2
0.002
P6.5 retina
TAAAAAAAAA (
196
)
63.4
0.0634
P6.5 retina
ACTGATGTCT
(
2
)
8.3
0.0083
P10.5 crx- retina
ACTGATGTCT
(
2
)
13
0.013
P10.5 crx- retina
TAAAAAAAAA (
196
)
9.3
0.0093
P10.5 crx+ retina
TAAAAAAAAA (
196
)
25
0.025
P10.5 crx+ retina
ACTGATGTCT
(
2
)
1.9
0.0019
Adult retinal
TAAAAAAAAA (
196
)
18.5
0.0185
ONL
TAAAAAAAAA (
196
)
28.7
0.0287
ONL
ACTGATGTCT
(
2
)
7.7
0.0077
