Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.32002	Vars2l	valyl-tRNA synthetase 2-like	17		68915
Gene Ontology	ATP binding | ligase activity | tRNA aminoacylation for protein translation | tRNA ligase activity
Human Homolog	VARS2L[valyl-tRNA synthetase 2-like]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 68 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AGCTGAGCCG GGCCTGCCCC GTACTGGCCA (2) TCAGAGGGTC (2) 8.1 0.0081 Cb medulloblastoma AGCTGAGCCG CAAGGGGAGG (3) GACCCCATTC GGTGGGGGAG GTACTGGCCA (2) 20.7 0.0207 P8 GC+1d culture AGCTGAGCCG 2.3 0.0023 P8 GC+SHH+1d culture AGCTGAGCCG GTACTGGCCA (2) 2.4 0.0024 3T3 fibroblasts AGCTGAGCCG CAAGGGGAGG (3) GGGGGGAGGA GTACTGGCCA (2) 31.5 0.0315 E15 cortex GACCACCTTC GTACTGGCCA (2) 9.8 0.0098 P1 cortex GACCACCTTC 4.5 0.0045 Hypothalamus GGTGGGGGAG GTACTGGCCA (2) 7.2 0.0072 E12.5 retina CAAGGGGAGG (3) GGCCTGCCCC 3.8 0.0038 E14.5 retina AGCTGAGCCG CAAGGGGAGG (3) GGCCTGCCCC 7.2 0.0072 E16.5 retina AGCTGAGCCG CAAGGGGAGG (3) GACCACCTTC GGCCTGCCCC TCAGAGGGTC (2) 12.6 0.0126 E18.5 retina AGCTGAGCCG CAAGGGGAGG (3) GGCCTGCCCC 16.3 0.0163 P0.5 retina GACCACCTTC GTACTGGCCA (2) 9.9 0.0099 P2.5 retina AGCTGAGCCG CAAGGGGAGG (3) GACCACCTTC GGCCTGCCCC GGGGGGAGGA TCAGAGGGTC (2) 15.9 0.0159 P4.5 retina AGCTGAGCCG CAAGGGGAGG (3) GGCCTGCCCC GGGGGGAGGA GTACTGGCCA (2) TCAGAGGGTC (2) 16 0.016 P6.5 retina AGCTGAGCCG CAAGGGGAGG (3) GACCCCATTC GGCCTGCCCC GTACTGGCCA (2) TCAGAGGGTC (2) 20 0.02 P10.5 crx- retina AGCTGAGCCG GACCACATTC GTACTGGCCA (2) 11.2 0.0112 P10.5 crx+ retina AGCTGAGCCG CAAGGGGAGG (3) GACCACATTC GGCCTGCCCC GTACTGGCCA (2) 13.4 0.0134 Adult retinal AGCTGAGCCG GACCACCTTC GGTGGGGGAG GTACTGGCCA (2) 16.8 0.0168 ONL CAAGGGGAGG (3) GTACTGGCCA (2) 5.7 0.0057