Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.32019	Tcp1	t-complex protein 1	17	17 7.5 cM	21454
Gene Ontology	ATP binding | microtubule organizing center | nuclear heterochromatin | pericentriolar material | protein folding
Human Homolog	TCP1[t-complex 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 110 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTTTAATCC (355) 52.2 0.0522 P8 Cb GC CCTGCAAGGA (4) 9.8 0.0098 P8 Cb GC GGAAACCACG (3) 3.3 0.0033 P8 Cb GC CCCAAGAGAA (5) 1.6 0.0016 P8 Cb GC GACCAAATCA (5) 1.6 0.0016 P8 Cb GC GGAGAAGTCA (4) 1.6 0.0016 Cb medulloblastoma CCTTTAATCC (355) 41.6 0.0416 Cb medulloblastoma CCTGCAAGGA (4) 11.6 0.0116 Cb medulloblastoma GACAAAATAA (7) 2.3 0.0023 Cb medulloblastoma TGTAATGAAA (4) 2.3 0.0023 P8 GC+1d culture CCTTTAATCC (355) 32 0.032 P8 GC+1d culture GGAAACCACG (3) 18.3 0.0183 P8 GC+1d culture CCTGCAAGGA (4) 8 0.008 P8 GC+1d culture AGCTCAGTGA (4) 1.1 0.0011 P8 GC+1d culture ATGCTCTTTG (2) 1.1 0.0011 P8 GC+1d culture ATGCTGCCAG (4) 1.1 0.0011 P8 GC+1d culture CAGTTCACCC (2) 1.1 0.0011 P8 GC+1d culture GCTGCAGCTT (2) 1.1 0.0011 P8 GC+1d culture TTATTTTGTG (5) 1.1 0.0011 P8 GC+SHH+1d culture CCTTTAATCC (355) 25.8 0.0258 P8 GC+SHH+1d culture GGAAACCACG (3) 17.6 0.0176 P8 GC+SHH+1d culture CCTGCAAGGA (4) 5.9 0.0059 P8 GC+SHH+1d culture CCCAAAAAAA (19) 3.5 0.0035 P8 GC+SHH+1d culture CAGTTCACCC (2) 2.3 0.0023 P8 GC+SHH+1d culture CCCAAGAGAA (5) 2.3 0.0023 P8 GC+SHH+1d culture GACAAAATAA (7) 2.3 0.0023 P8 GC+SHH+1d culture GACCAAATCA (5) 2.3 0.0023 P8 GC+SHH+1d culture ATGCTCTTTG (2) 1.2 0.0012 P8 GC+SHH+1d culture ATGCTGCCAG (4) 1.2 0.0012 P8 GC+SHH+1d culture TGTAATGAAA (4) 1.2 0.0012 3T3 fibroblasts CCTTTAATCC (355) 70.1 0.0701 3T3 fibroblasts CCTGCAAGGA (4) 21 0.021 3T3 fibroblasts GGAAACCACG (3) 21 0.021 3T3 fibroblasts CAGTTCACCC (2) 7 0.007 E15 cortex CCTTTAATCC (355) 54.4 0.0544 E15 cortex GGAAACCACG (3) 24.7 0.0247 E15 cortex CCCAAAAAAA (19) 4.9 0.0049 E15 cortex CCCAAGAGAA (5) 4.9 0.0049 E15 cortex CCTGCAAGGA (4) 4.9 0.0049 P1 cortex CCTTTAATCC (355) 154.5 0.1545 P1 cortex GGAAACCACG (3) 9.1 0.0091 P1 cortex CAGTTCACCC (2) 4.5 0.0045 Hypothalamus CCTTTAATCC (355) 19.9 0.0199 Hypothalamus CCTGCAAGGA (4) 3.6 0.0036 Hypothalamus GGAAACCACG (3) 1.8 0.0018 Hypothalamus TGTAATGAAA (4) 1.8 0.0018 E12.5 retina CCTTTAATCC (355) 75.1 0.0751 E12.5 retina CAGTTCACCC (2) 7.5 0.0075 E12.5 retina GGAAACCACG (3) 7.5 0.0075 E12.5 retina CCTGCAAGGA (4) 3.8 0.0038 E12.5 retina AGCTCAGTGA (4) 1.9 0.0019 E14.5 retina CCTTTAATCC (355) 120.3 0.1203 E14.5 retina GGAAACCACG (3) 5.5 0.0055 E14.5 retina CAGTTCACCC (2) 1.8 0.0018 E14.5 retina CCCAAGAGAA (5) 1.8 0.0018 E14.5 retina CCTGCAAGGA (4) 1.8 0.0018 E14.5 retina GAAGACAAAG (6) 1.8 0.0018 E14.5 retina GCTGCAGCTT (2) 1.8 0.0018 E14.5 retina GGAGAAGTCA (4) 1.8 0.0018 E16.5 retina CCTTTAATCC (355) 68.8 0.0688 E16.5 retina GGAAACCACG (3) 14.5 0.0145 E16.5 retina CAGTTCACCC (2) 7.2 0.0072 E16.5 retina CCCAAGAGAA (5) 5.4 0.0054 E16.5 retina CCTGCAAGGA (4) 5.4 0.0054 E16.5 retina GAAGACAAAG (6) 3.6 0.0036 E16.5 retina CCCAAAAAAA (19) 1.8 0.0018 E18.5 retina CCTTTAATCC (355) 23.6 0.0236 E18.5 retina GGAAACCACG (3) 5.5 0.0055 E18.5 retina CCCAAAAAAA (19) 3.6 0.0036 E18.5 retina CCTGCAAGGA (4) 1.8 0.0018 P0.5 retina CCTTTAATCC (355) 72.6 0.0726 P0.5 retina GGAAACCACG (3) 15.7 0.0157 P0.5 retina CCTGCAAGGA (4) 7.9 0.0079 P0.5 retina CAGTTCACCC (2) 2 0.002 P0.5 retina CCCAAAAAAA (19) 2 0.002 P2.5 retina CCTTTAATCC (355) 70.4 0.0704 P2.5 retina CCTGCAAGGA (4) 12.3 0.0123 P2.5 retina CTGATCAATG 3.5 0.0035 P2.5 retina ATGCTGCCAG (4) 1.8 0.0018 P2.5 retina CCCAAAAAAA (19) 1.8 0.0018 P2.5 retina CCCAAGAGAA (5) 1.8 0.0018 P2.5 retina GACCAAATCA (5) 1.8 0.0018 P2.5 retina GCTGCAGCTT (2) 1.8 0.0018 P4.5 retina CCTTTAATCC (355) 43.6 0.0436 P4.5 retina CCTGCAAGGA (4) 19.8 0.0198 P4.5 retina GGAAACCACG (3) 5.9 0.0059 P4.5 retina CCCAAAAAAA (19) 2 0.002 P4.5 retina CTGATCAATG 2 0.002 P6.5 retina CCTTTAATCC (355) 70 0.07 P6.5 retina CCTGCAAGGA (4) 11.7 0.0117 P6.5 retina GGAAACCACG (3) 6.7 0.0067 P6.5 retina CCCAAAAAAA (19) 3.3 0.0033 P6.5 retina AGCTCAGTGA (4) 1.7 0.0017 P10.5 crx- retina CCTTTAATCC (355) 63.2 0.0632 P10.5 crx- retina CCTGCAAGGA (4) 11.1 0.0111 P10.5 crx- retina GGAAACCACG (3) 11.1 0.0111 P10.5 crx- retina TTATTTTGTG (5) 1.9 0.0019 P10.5 crx+ retina CCTTTAATCC (355) 38.4 0.0384 P10.5 crx+ retina CCTGCAAGGA (4) 13.5 0.0135 P10.5 crx+ retina GGAAACCACG (3) 11.5 0.0115 P10.5 crx+ retina AGCTCAGTGA (4) 1.9 0.0019 Adult retinal CCTTTAATCC (355) 129.6 0.1296 Adult retinal CAGTTCACCC (2) 5.6 0.0056 Adult retinal CCTGCAAGGA (4) 3.7 0.0037 Adult retinal GGAAACCACG (3) 3.7 0.0037 Adult retinal CCCAAAAAAA (19) 1.9 0.0019 ONL CCTTTAATCC (355) 84.3 0.0843 ONL GGAAACCACG (3) 11.5 0.0115 ONL CCCAAAAAAA (19) 1.9 0.0019 ONL GGAGAAGTCA (4) 1.9 0.0019