Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.3213	Ldlr	low density lipoprotein receptor	9	9 5.0 cM	16835
Gene Ontology	calcium ion binding | cholesterol homeostasis | cholesterol metabolism | coated pit | endocytosis | endosome | extracellular space | integral to membrane | lipid transport | lipid transporter activity | low-density lipoprotein receptor activity | membrane | protein binding | receptor activity
Human Homolog	LDLR[low density lipoprotein receptor (familial hypercholesterolemia)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 51 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC TCTGTCACCT (2) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma TCTGTCACCT (2) 9.2 0.0092 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture TCTGTCACCT (2) 4.6 0.0046 P8 GC+1d culture GGTAACCTAA 3.4 0.0034 P8 GC+1d culture TGACAAATCT (2) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture TCTGTCACCT (2) 9.4 0.0094 P8 GC+SHH+1d culture GGTAACCTAA 2.3 0.0023 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts GGTAACCTAA 3.5 0.0035 3T3 fibroblasts TCTGTCACCT (2) 3.5 0.0035 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex TCTGTCACCT (2) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex AGAGGCTCCA (5) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus GGTAACCTAA 1.8 0.0018 Hypothalamus TCTGTCACCT (2) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina TCTGTCACCT (2) 5.6 0.0056 E12.5 retina GGTAACCTAA 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina TCTGTCACCT (2) 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina GGTAACCTAA 1.8 0.0018 E16.5 retina TCTGTCACCT (2) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina TCTGTCACCT (2) 7.3 0.0073 E18.5 retina TGACAAATCT (2) 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina TCTGTCACCT (2) 2 0.002 P0.5 retina TTTGTCACCT (2) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina TCTGTCACCT (2) 5.3 0.0053 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina TCTGTCACCT (2) 4 0.004 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina TCTGTCACCT (2) 1.7 0.0017 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina TCTGTCACCT (2) 5.6 0.0056 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina TCTGTCACCT (2) 7.7 0.0077 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal TGACAAATCT (2) 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL TCTGTCACCT (2) 5.7 0.0057 ONL TTTGTCACCT (2) 5.7 0.0057 ONL AGAGGCTCCA (5) 3.8 0.0038