Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.324	Amy2	amylase 2, pancreatic	3	3 50.0 cM	11723
Gene Ontology	alpha-amylase activity | calcium ion binding | carbohydrate metabolism | extracellular space | hydrolase activity | hydrolase activity, acting on glycosyl bonds
Human Homolog	AMY2A[amylase, alpha 2A; pancreatic]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 132 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC GTGCTGGAGG (10) 3.3 0.0033 P8 Cb GC AGCTGTGCTG (3) 1.6 0.0016 P8 Cb GC GAGGCATTTC (13) 1.6 0.0016 P8 Cb GC GCTGCCTTCA (8) 1.6 0.0016 P8 Cb GC TTGACTCACA 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma AGCTGTGCTG (3) 16.2 0.0162 Cb medulloblastoma TGTGTCTTCA (4) 4.6 0.0046 Cb medulloblastoma GAGGCATTTC (13) 2.3 0.0023 Cb medulloblastoma GGTGCCCTTC (2) 2.3 0.0023 Cb medulloblastoma GGTGCTGGGA (14) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture AGCTGTGCTG (3) 4.6 0.0046 P8 GC+1d culture GAGGCATTTC (13) 4.6 0.0046 P8 GC+1d culture GGTGCTGGAG (2) 3.4 0.0034 P8 GC+1d culture TGTGTCTTCA (4) 2.3 0.0023 P8 GC+1d culture GCTGCCTTCA (8) 1.1 0.0011 P8 GC+1d culture TGTGCTTTGT (3) 1.1 0.0011 P8 GC+1d culture TTGACTCACA 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture AGCTGTGCTG (3) 5.9 0.0059 P8 GC+SHH+1d culture GAGGCATTTC (13) 2.3 0.0023 P8 GC+SHH+1d culture GTGCTGGAGG (10) 2.3 0.0023 P8 GC+SHH+1d culture AACAGTGTGC (10) 1.2 0.0012 P8 GC+SHH+1d culture GCTGCCTTCA (8) 1.2 0.0012 P8 GC+SHH+1d culture GGTGCTGGAG (2) 1.2 0.0012 P8 GC+SHH+1d culture TGACAGAATT (3) 1.2 0.0012 P8 GC+SHH+1d culture TGTGTCTTCA (4) 1.2 0.0012 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts AGCTGTGCTG (3) 3.5 0.0035 3T3 fibroblasts GCTGCCTTCA (8) 3.5 0.0035 3T3 fibroblasts GTGCTGGAGG (10) 3.5 0.0035 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex GAGGCATTTC (13) 24.7 0.0247 E15 cortex AGCTGTGCTG (3) 9.9 0.0099 E15 cortex GGTGCTGGGA (14) 4.9 0.0049 E15 cortex GTGCTGGAGG (10) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex AGCTGTGCTG (3) 13.6 0.0136 P1 cortex GCTGCCTTCA (8) 4.5 0.0045 P1 cortex GGTGCTGGAG (2) 4.5 0.0045 P1 cortex GTTGCCTTCA (4) 4.5 0.0045 P1 cortex TGTGTCTTCA (4) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus AGCTGTGCTG (3) 14.5 0.0145 Hypothalamus GTGCCTGGAG (3) 5.4 0.0054 Hypothalamus GGTGCTGGGA (14) 3.6 0.0036 Hypothalamus CTGAGTTAGA (2) 1.8 0.0018 Hypothalamus GAGGCATTTC (13) 1.8 0.0018 Hypothalamus GCTGCCTTCA (8) 1.8 0.0018 Hypothalamus GTGCTGGAGG (10) 1.8 0.0018 Hypothalamus TGACAGAATT (3) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina GTGCTGGAGG (10) 5.6 0.0056 E12.5 retina AACAGTGTGC (10) 1.9 0.0019 E12.5 retina AGCTGTGCTG (3) 1.9 0.0019 E12.5 retina CTGAGTTAGA (2) 1.9 0.0019 E12.5 retina GAGGCATTTC (13) 1.9 0.0019 E12.5 retina GGTGCTGGAG (2) 1.9 0.0019 E12.5 retina GGTGCTGGGA (14) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina GAGGCATTTC (13) 10.9 0.0109 E14.5 retina GTGCTGGAGG (10) 3.6 0.0036 E14.5 retina GGTGCTGGGA (14) 1.8 0.0018 E14.5 retina TGTGCTTTGT (3) 1.8 0.0018 E14.5 retina TTGACTCACA 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina GAGGCATTTC (13) 7.2 0.0072 E16.5 retina AGCTGTGCTG (3) 3.6 0.0036 E16.5 retina GTGCTGGAGG (10) 3.6 0.0036 E16.5 retina GGGGGTGGAG (6) 1.8 0.0018 E16.5 retina GGTGCTGGAG (2) 1.8 0.0018 E16.5 retina TGTGCTTTGT (3) 1.8 0.0018 E16.5 retina TGTGTCTTCA (4) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina AGCTGTGCTG (3) 1.8 0.0018 E18.5 retina GAGGCATTTC (13) 1.8 0.0018 E18.5 retina TGTGTCTTCA (4) 1.8 0.0018 E18.5 retina TTGACTCACA 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina GGTGCTGGAG (2) 7.9 0.0079 P0.5 retina GAGGCATTTC (13) 5.9 0.0059 P0.5 retina GGTGCTGGGA (14) 3.9 0.0039 P0.5 retina AGCTGTGCTG (3) 2 0.002 P0.5 retina GCTGCCTTCA (8) 2 0.002 P0.5 retina TGACAGAATT (3) 2 0.002 P0.5 retina TTGACTCACA 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina AGCTGTGCTG (3) 5.3 0.0053 P2.5 retina GAGGCATTTC (13) 5.3 0.0053 P2.5 retina GTGCTGGAGG (10) 3.5 0.0035 P2.5 retina CTGAGTTAGA (2) 1.8 0.0018 P2.5 retina GCTGCCTTCA (8) 1.8 0.0018 P2.5 retina GGTGCTGGGA (14) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina AGCTGTGCTG (3) 2 0.002 P4.5 retina GCTGCCTTCA (8) 2 0.002 P4.5 retina GGTGCTGGAG (2) 2 0.002 P4.5 retina GTTGCCTTCA (4) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina GTGCTGGAGG (10) 13.3 0.0133 P6.5 retina GAGGCATTTC (13) 5 0.005 P6.5 retina GGTGCTGGGA (14) 3.3 0.0033 P6.5 retina AGCTGTGCTG (3) 1.7 0.0017 P6.5 retina GGTGCCCTTC (2) 1.7 0.0017 P6.5 retina GGTGCTGGAG (2) 1.7 0.0017 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina TGTGTCTTCA (4) 11.1 0.0111 P10.5 crx- retina GAGGCATTTC (13) 7.4 0.0074 P10.5 crx- retina AGCTGTGCTG (3) 5.6 0.0056 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina AGCTGTGCTG (3) 11.5 0.0115 P10.5 crx+ retina GAGGCATTTC (13) 9.6 0.0096 P10.5 crx+ retina GTGCTGGAGG (10) 5.8 0.0058 P10.5 crx+ retina AACAGTGTGC (10) 1.9 0.0019 P10.5 crx+ retina GGGGGTGGAG (6) 1.9 0.0019 P10.5 crx+ retina GGTGCTGGGA (14) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal GAGGCATTTC (13) 5.6 0.0056 Adult retinal GGTGCTGGGA (14) 5.6 0.0056 Adult retinal AGCTGTGCTG (3) 3.7 0.0037 Adult retinal GTGCTGGAGG (10) 3.7 0.0037 Adult retinal GCTGCCTTCA (8) 1.9 0.0019 Adult retinal GGGGGTGGAG (6) 1.9 0.0019 Adult retinal GGTGCCCTTC (2) 1.9 0.0019 Adult retinal GTTGCCTTCA (4) 1.9 0.0019 Adult retinal TGACAGAATT (3) 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL GGTGCTGGGA (14) 5.7 0.0057 ONL GAGGCATTTC (13) 3.8 0.0038 ONL GCTGCCTTCA (8) 1.9 0.0019