Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.331588
BC057893
cDNA sequence BC057893
4
272027
Human Homolog
C9orf97[chromosome 9 open reading frame 97]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 43 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
ATGGCTCACA (
25
)
11.4
0.0114
P8 Cb GC
AGAGCAGAAA
(
2
)
1.6
0.0016
P8 Cb GC
GTGTAAAAAA (
2
)
1.6
0.0016
P8 Cb GC
GTGTTAAAAA (
3
)
1.6
0.0016
Cb medulloblastoma
ATGGCTCACA (
25
)
20.8
0.0208
Cb medulloblastoma
GTGTAAAAAA (
2
)
2.3
0.0023
P8 GC+1d culture
ATGGCTCACA (
25
)
33.1
0.0331
P8 GC+1d culture
TGGCCACACA
(
2
)
1.1
0.0011
P8 GC+SHH+1d culture
ATGGCTCACA (
25
)
25.8
0.0258
P8 GC+SHH+1d culture
CCAATTTTTA (
7
)
2.3
0.0023
P8 GC+SHH+1d culture
TGGCCACACA
(
2
)
1.2
0.0012
3T3 fibroblasts
ATGGCTCACA (
25
)
31.5
0.0315
3T3 fibroblasts
AGAGCAGAAA
(
2
)
3.5
0.0035
3T3 fibroblasts
TGGCCACACA
(
2
)
3.5
0.0035
E15 cortex
ATGGCTCACA (
25
)
29.7
0.0297
E15 cortex
AGAGCAGAAA
(
2
)
4.9
0.0049
P1 cortex
ATGGCTCACA (
25
)
13.6
0.0136
P1 cortex
GTGTAAAAAA (
2
)
4.5
0.0045
Hypothalamus
ATGGCTCACA (
25
)
43.5
0.0435
Hypothalamus
GTGTTAAAAA (
3
)
3.6
0.0036
Hypothalamus
GTGTAAAAAA (
2
)
1.8
0.0018
E12.5 retina
ATGGCTCACA (
25
)
48.8
0.0488
E12.5 retina
CCAATTTTTA (
7
)
3.8
0.0038
E12.5 retina
GTGTTAAAAA (
3
)
1.9
0.0019
E14.5 retina
ATGGCTCACA (
25
)
47.4
0.0474
E14.5 retina
GTGTTAAAAA (
3
)
1.8
0.0018
E16.5 retina
ATGGCTCACA (
25
)
58
0.058
E18.5 retina
ATGGCTCACA (
25
)
38.2
0.0382
E18.5 retina
GTGTTAAAAA (
3
)
1.8
0.0018
P0.5 retina
ATGGCTCACA (
25
)
35.3
0.0353
P0.5 retina
AGAGCAGAAA
(
2
)
2
0.002
P0.5 retina
CCAATTTTTA (
7
)
2
0.002
P0.5 retina
GTGTAAAAAA (
2
)
2
0.002
P2.5 retina
ATGGCTCACA (
25
)
31.7
0.0317
P4.5 retina
ATGGCTCACA (
25
)
23.8
0.0238
P6.5 retina
ATGGCTCACA (
25
)
55
0.055
P10.5 crx- retina
ATGGCTCACA (
25
)
44.6
0.0446
P10.5 crx+ retina
ATGGCTCACA (
25
)
44.2
0.0442
P10.5 crx+ retina
CCAATTTTTA (
7
)
1.9
0.0019
Adult retinal
ATGGCTCACA (
25
)
33.3
0.0333
Adult retinal
TGGCCACACA
(
2
)
1.9
0.0019
ONL
ATGGCTCACA (
25
)
49.8
0.0498
ONL
GTGTAAAAAA (
2
)
3.8
0.0038
