Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.33284
Lrrk1
leucine-rich repeat kinase 1
7
233328
Mm.33284
C230002E15Rik
RIKEN cDNA C230002E15 gene
7
319708
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 75 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
GGCAGCAAAC
(
6
)
14.7
0.0147
P8 Cb GC
CTGGGCCCAG (
8
)
8.2
0.0082
P8 Cb GC
CCCAGTCCCT (
7
)
3.3
0.0033
P8 Cb GC
GGAAGCCACA
(
3
)
1.6
0.0016
P8 Cb GC
TGCTCAGAAA
(
2
)
1.6
0.0016
Cb medulloblastoma
CCTGCAACCA (
4
)
11.6
0.0116
Cb medulloblastoma
CTGGGCCCAG (
8
)
9.2
0.0092
Cb medulloblastoma
GGCAGCAAAC
(
6
)
9.2
0.0092
Cb medulloblastoma
GTTTAAAAAA
(
5
)
6.9
0.0069
Cb medulloblastoma
TGCTCAGAAA
(
2
)
2.3
0.0023
P8 GC+1d culture
GGCAGCAAAC
(
6
)
20.5
0.0205
P8 GC+1d culture
CTGGGCCCAG (
8
)
19.4
0.0194
P8 GC+1d culture
CCTGCAACCA (
4
)
4.6
0.0046
P8 GC+1d culture
CCCAGTCCCT (
7
)
2.3
0.0023
P8 GC+SHH+1d culture
CTGGGCCCAG (
8
)
11.7
0.0117
P8 GC+SHH+1d culture
GGCAGCAAAC
(
6
)
9.4
0.0094
P8 GC+SHH+1d culture
CCTGCAACCA (
4
)
3.5
0.0035
P8 GC+SHH+1d culture
CCCAGTCCCT (
7
)
1.2
0.0012
P8 GC+SHH+1d culture
GGAAGCCACA
(
3
)
1.2
0.0012
P8 GC+SHH+1d culture
GTTTAAAAAA
(
5
)
1.2
0.0012
3T3 fibroblasts
CCTGCAACCC (
4
)
42.1
0.0421
3T3 fibroblasts
CCTGCAACCA (
4
)
10.5
0.0105
3T3 fibroblasts
CTGGGCCCAG (
8
)
7
0.007
3T3 fibroblasts
CTGGTGAGAC
(
8
)
3.5
0.0035
E15 cortex
GGCAGCAAAC
(
6
)
89.1
0.0891
E15 cortex
CCTGCAACCA (
4
)
4.9
0.0049
E15 cortex
CCTGCAACCC (
4
)
4.9
0.0049
E15 cortex
GGAAGCCACA
(
3
)
4.9
0.0049
P1 cortex
GGCAGCAAAC
(
6
)
22.7
0.0227
P1 cortex
CTGGGCCCAG (
8
)
13.6
0.0136
P1 cortex
CCTGCAACCA (
4
)
9.1
0.0091
Hypothalamus
CTGGGCCCAG (
8
)
25.4
0.0254
Hypothalamus
GGCAGCAAAC
(
6
)
9.1
0.0091
Hypothalamus
CCCAGTCCCT (
7
)
1.8
0.0018
Hypothalamus
CCTGCAACCA (
4
)
1.8
0.0018
E12.5 retina
CCTGCAACCA (
4
)
3.8
0.0038
E12.5 retina
GGCAGCAAAC
(
6
)
3.8
0.0038
E12.5 retina
CTGGGCCCAG (
8
)
1.9
0.0019
E14.5 retina
CTGGGCCCAG (
8
)
7.3
0.0073
E14.5 retina
CCTGCAACCA (
4
)
1.8
0.0018
E14.5 retina
CCTGCAACCC (
4
)
1.8
0.0018
E14.5 retina
GTTTAAAAAA
(
5
)
1.8
0.0018
E16.5 retina
GGCAGCAAAC
(
6
)
5.4
0.0054
E16.5 retina
CTGGGCCCAG (
8
)
3.6
0.0036
E18.5 retina
CTGGGCCCAG (
8
)
3.6
0.0036
E18.5 retina
GTTTAAAAAA
(
5
)
3.6
0.0036
E18.5 retina
CTGGTGAGAC
(
8
)
1.8
0.0018
P0.5 retina
CCTGCAACCA (
4
)
11.8
0.0118
P0.5 retina
CTGGGCCCAG (
8
)
7.9
0.0079
P0.5 retina
GGCAGCAAAC
(
6
)
7.9
0.0079
P2.5 retina
CTGGGCCCAG (
8
)
15.8
0.0158
P2.5 retina
GGCAGCAAAC
(
6
)
10.6
0.0106
P2.5 retina
CCCAGTCCCT (
7
)
3.5
0.0035
P2.5 retina
CCTGCAACCA (
4
)
1.8
0.0018
P2.5 retina
GTTTAAAAAA
(
5
)
1.8
0.0018
P4.5 retina
GGCAGCAAAC
(
6
)
13.9
0.0139
P4.5 retina
CTGGGCCCAG (
8
)
11.9
0.0119
P4.5 retina
CCTGCAACCA (
4
)
4
0.004
P4.5 retina
CCCAGTCCCT (
7
)
2
0.002
P6.5 retina
GGCAGCAAAC
(
6
)
25
0.025
P6.5 retina
CTGGGCCCAG (
8
)
11.7
0.0117
P6.5 retina
CCTGCAACCA (
4
)
3.3
0.0033
P6.5 retina
CCCAGTCCCT (
7
)
1.7
0.0017
P6.5 retina
TGCTCAGAAA
(
2
)
1.7
0.0017
P10.5 crx- retina
GGCAGCAAAC
(
6
)
33.4
0.0334
P10.5 crx- retina
CCTGCAACCA (
4
)
3.7
0.0037
P10.5 crx- retina
CTGGGCCCAG (
8
)
1.9
0.0019
P10.5 crx+ retina
CTGGGCCCAG (
8
)
23.1
0.0231
P10.5 crx+ retina
GGCAGCAAAC
(
6
)
17.3
0.0173
P10.5 crx+ retina
CCTGCAACCA (
4
)
5.8
0.0058
P10.5 crx+ retina
CCCAGTCCCT (
7
)
1.9
0.0019
Adult retinal
GGCAGCAAAC
(
6
)
18.5
0.0185
Adult retinal
CTGGGCCCAG (
8
)
13
0.013
Adult retinal
CCTGCAACCA (
4
)
9.3
0.0093
ONL
TGCTCAGAAA
(
2
)
1.9
0.0019
