Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.332840
Ptcd1
pentatricopeptide repeat domain 1
5
71799
Human Homolog
PTCD1[pentatricopeptide repeat domain 1]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 34 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
AGCTGTACAG
(
3
)
11.4
0.0114
Cb medulloblastoma
AGCTGTACAG
(
3
)
CTTCCCCCCC
13.8
0.0138
P8 GC+1d culture
AGCTGTACAG
(
3
)
CTTCCCCCCC
15.9
0.0159
P8 GC+SHH+1d culture
AGCTGTACAG
(
3
)
CTTCCCCCCC
24.6
0.0246
3T3 fibroblasts
AGCTGTACAG
(
3
)
CTTCCCCCCC
52.6
0.0526
E15 cortex
AGCTGTACAG
(
3
)
CTTCCCCCCC
14.8
0.0148
P1 cortex
AGCTGTACAG
(
3
)
CTTCCCCCCC
9
0.009
Hypothalamus
AGCTGTACAG
(
3
)
CTTCCCCCCC
18.1
0.0181
E12.5 retina
AGCTGTACAG
(
3
)
22.5
0.0225
E14.5 retina
AGCTGTACAG
(
3
)
23.7
0.0237
E16.5 retina
AGCTGTACAG
(
3
)
CTTCCCCCCC
21.7
0.0217
E18.5 retina
AGCTGTACAG
(
3
)
CTTCCCCCCC
TGGAAGCACT
(
2
)
18.2
0.0182
P0.5 retina
AGCTGTACAG
(
3
)
13.7
0.0137
P2.5 retina
AGCTGTACAG
(
3
)
33.4
0.0334
P4.5 retina
AGCTGTACAG
(
3
)
TGGAAGCACT
(
2
)
15.9
0.0159
P6.5 retina
AGCTGTACAG
(
3
)
TGGAAGCACT
(
2
)
15
0.015
P10.5 crx- retina
AGCTGTACAG
(
3
)
18.6
0.0186
P10.5 crx+ retina
AGCTGTACAG
(
3
)
TGGAAGCACT
(
2
)
21.1
0.0211
Adult retinal
AGCTGTACAG
(
3
)
CTTCCCCCCC
18.6
0.0186
ONL
AGCTGTACAG
(
3
)
13.4
0.0134
