Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.333078
4831416G18Rik
RIKEN cDNA 4831416G18 gene
10
237353
Human Homolog
SH3MD4[SH3 multiple domains 4]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 92 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
GAAAAAAAAA (
204
)
45.7
0.0457
P8 Cb GC
GAGTGCCTGT (
2
)
14.7
0.0147
P8 Cb GC
GGAAAAAAAA (
69
)
8.2
0.0082
P8 Cb GC
CCCTGCAGCT (
4
)
6.5
0.0065
P8 Cb GC
GAGAAAAAAA
(
18
)
3.3
0.0033
Cb medulloblastoma
GAAAAAAAAA (
204
)
173.4
0.1734
Cb medulloblastoma
GGAAAAAAAA (
69
)
41.6
0.0416
Cb medulloblastoma
CCCTGCAGCT (
4
)
18.5
0.0185
Cb medulloblastoma
GAGAAAAAAA
(
18
)
11.6
0.0116
Cb medulloblastoma
GAGTGCCTGT (
2
)
9.2
0.0092
P8 GC+1d culture
GAAAAAAAAA (
204
)
41.1
0.0411
P8 GC+1d culture
GAGTGCCTGT (
2
)
36.5
0.0365
P8 GC+1d culture
CCCTGCAGCT (
4
)
8
0.008
P8 GC+1d culture
GGAAAAAAAA (
69
)
5.7
0.0057
P8 GC+1d culture
GAGAAAAAAA
(
18
)
4.6
0.0046
P8 GC+SHH+1d culture
GAAAAAAAAA (
204
)
77.3
0.0773
P8 GC+SHH+1d culture
GAGTGCCTGT (
2
)
42.2
0.0422
P8 GC+SHH+1d culture
CCCTGCAGCT (
4
)
9.4
0.0094
P8 GC+SHH+1d culture
GGAAAAAAAA (
69
)
7
0.007
P8 GC+SHH+1d culture
GAGAAAAAAA
(
18
)
3.5
0.0035
3T3 fibroblasts
GAGTGCCTGT (
2
)
17.5
0.0175
E15 cortex
GAAAAAAAAA (
204
)
54.4
0.0544
E15 cortex
GGAAAAAAAA (
69
)
9.9
0.0099
E15 cortex
CCCTGCAGCT (
4
)
4.9
0.0049
E15 cortex
GAGTGCCTGT (
2
)
4.9
0.0049
P1 cortex
GAAAAAAAAA (
204
)
45.5
0.0455
P1 cortex
GAGAAAAAAA
(
18
)
4.5
0.0045
P1 cortex
GAGTGCCTGT (
2
)
4.5
0.0045
P1 cortex
GGAAAAAAAA (
69
)
4.5
0.0045
Hypothalamus
GAAAAAAAAA (
204
)
67
0.067
Hypothalamus
GGAAAAAAAA (
69
)
14.5
0.0145
Hypothalamus
CCCTGCAGCT (
4
)
5.4
0.0054
Hypothalamus
GAGTGCCTGT (
2
)
3.6
0.0036
Hypothalamus
CTGCTGGCCA (
10
)
1.8
0.0018
Hypothalamus
GAGAAAAAAA
(
18
)
1.8
0.0018
E12.5 retina
GAAAAAAAAA (
204
)
46.9
0.0469
E12.5 retina
GAGTGCCTGT (
2
)
5.6
0.0056
E12.5 retina
GGAAAAAAAA (
69
)
1.9
0.0019
E14.5 retina
GAAAAAAAAA (
204
)
34.6
0.0346
E14.5 retina
GGAAAAAAAA (
69
)
10.9
0.0109
E14.5 retina
GAGAAAAAAA
(
18
)
9.1
0.0091
E14.5 retina
GAGTGCCTGT (
2
)
5.5
0.0055
E14.5 retina
CCCTGCAGCT (
4
)
1.8
0.0018
E16.5 retina
GAAAAAAAAA (
204
)
23.5
0.0235
E16.5 retina
GAGTGCCTGT (
2
)
9.1
0.0091
E16.5 retina
CCCTGCAGCT (
4
)
3.6
0.0036
E16.5 retina
GAGAAAAAAA
(
18
)
1.8
0.0018
E16.5 retina
GGAAAAAAAA (
69
)
1.8
0.0018
E18.5 retina
GAAAAAAAAA (
204
)
65.5
0.0655
E18.5 retina
GGAAAAAAAA (
69
)
16.4
0.0164
E18.5 retina
GAGTGCCTGT (
2
)
7.3
0.0073
E18.5 retina
CCCTGCAGCT (
4
)
3.6
0.0036
E18.5 retina
GAGAAAAAAA
(
18
)
1.8
0.0018
P0.5 retina
GAAAAAAAAA (
204
)
35.3
0.0353
P0.5 retina
GAGTGCCTGT (
2
)
13.7
0.0137
P0.5 retina
GGAAAAAAAA (
69
)
13.7
0.0137
P0.5 retina
GAGAAAAAAA
(
18
)
2
0.002
P2.5 retina
GAAAAAAAAA (
204
)
86.2
0.0862
P2.5 retina
CCCTGCAGCT (
4
)
10.6
0.0106
P2.5 retina
GAGTGCCTGT (
2
)
8.8
0.0088
P2.5 retina
GGAAAAAAAA (
69
)
7
0.007
P2.5 retina
GAGAAAAAAA
(
18
)
3.5
0.0035
P4.5 retina
GAAAAAAAAA (
204
)
51.5
0.0515
P4.5 retina
GAGTGCCTGT (
2
)
15.9
0.0159
P4.5 retina
GGAAAAAAAA (
69
)
13.9
0.0139
P4.5 retina
GAGAAAAAAA
(
18
)
5.9
0.0059
P4.5 retina
CCCTGCAGCT (
4
)
4
0.004
P6.5 retina
GAAAAAAAAA (
204
)
40
0.04
P6.5 retina
GAGTGCCTGT (
2
)
18.3
0.0183
P6.5 retina
GGAAAAAAAA (
69
)
13.3
0.0133
P6.5 retina
CCCTGCAGCT (
4
)
6.7
0.0067
P6.5 retina
GAGAAAAAAA
(
18
)
3.3
0.0033
P10.5 crx- retina
GAAAAAAAAA (
204
)
16.7
0.0167
P10.5 crx- retina
GAGTGCCTGT (
2
)
3.7
0.0037
P10.5 crx- retina
GGAAAAAAAA (
69
)
3.7
0.0037
P10.5 crx- retina
GAGAAAAAAA
(
18
)
1.9
0.0019
P10.5 crx+ retina
GAAAAAAAAA (
204
)
42.3
0.0423
P10.5 crx+ retina
GGAAAAAAAA (
69
)
15.4
0.0154
P10.5 crx+ retina
GAGTGCCTGT (
2
)
11.5
0.0115
P10.5 crx+ retina
GAGAAAAAAA
(
18
)
7.7
0.0077
P10.5 crx+ retina
CCCTGCAGCT (
4
)
3.8
0.0038
P10.5 crx+ retina
CTGCTGGCCA (
10
)
1.9
0.0019
Adult retinal
GAAAAAAAAA (
204
)
16.7
0.0167
Adult retinal
GAGTGCCTGT (
2
)
7.4
0.0074
Adult retinal
GGAAAAAAAA (
69
)
5.6
0.0056
Adult retinal
CTGCTGGCCA (
10
)
3.7
0.0037
Adult retinal
CCCTGCAGCT (
4
)
1.9
0.0019
ONL
GAAAAAAAAA (
204
)
24.9
0.0249
ONL
GGAAAAAAAA (
69
)
17.2
0.0172
ONL
CCCTGCAGCT (
4
)
3.8
0.0038
ONL
GAGAAAAAAA
(
18
)
1.9
0.0019
ONL
GAGTGCCTGT (
2
)
1.9
0.0019
