Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.336087	Hmgb3	high mobility group box 3	X	X A7.1	15354
Gene Ontology	chromatin | chromosome | DNA binding | DNA packaging | negative regulation of B-cell differentiation | negative regulation of myeloid blood cell differentiation | nucleus | regulation of transcription, DNA-dependent
Human Homolog	HMGB3[high-mobility group box 3]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 6 In Situ Hybridization Images

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SAGE Tags

Total 62 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AGAAGTGTTT (3) 6.5 0.0065 P8 Cb GC AATAAAAGCT (4) 3.3 0.0033 P8 Cb GC GCGGACGACG (3) 3.3 0.0033 P8 Cb GC CCGGCCGACC 1.6 0.0016 P8 Cb GC TCTAGCAAAG 1.6 0.0016 P8 Cb GC TCTTTTGGTT (4) 1.6 0.0016 Cb medulloblastoma TCTTTTGGTT (4) 2.3 0.0023 P8 GC+1d culture AGAAGTGTTT (3) 16 0.016 P8 GC+1d culture GCGGACGACG (3) 4.6 0.0046 P8 GC+1d culture CCGGCCGACC 3.4 0.0034 P8 GC+1d culture TCTTTTGGTT (4) 3.4 0.0034 P8 GC+1d culture AATAAAAGCT (4) 1.1 0.0011 P8 GC+SHH+1d culture AGAAGTGTTT (3) 18.7 0.0187 P8 GC+SHH+1d culture CCGGCCGACC 5.9 0.0059 P8 GC+SHH+1d culture TCTAGCAAAG 3.5 0.0035 P8 GC+SHH+1d culture GCGGACGACG (3) 2.3 0.0023 P8 GC+SHH+1d culture TCTTTTGGTT (4) 2.3 0.0023 3T3 fibroblasts GCGGACGACG (3) 7 0.007 3T3 fibroblasts TCTTTTGGTT (4) 7 0.007 3T3 fibroblasts CGGGGCGAGC (5) 3.5 0.0035 E15 cortex AGAAGTGTTT (3) 9.9 0.0099 E15 cortex TCTTTTGGTT (4) 4.9 0.0049 P1 cortex CGGGGCGAGC (5) 4.5 0.0045 P1 cortex TCTTTTGGTT (4) 4.5 0.0045 Hypothalamus CACAAGATGT (2) 3.6 0.0036 Hypothalamus TCTTTTGGTT (4) 3.6 0.0036 E12.5 retina AGAAGTGTTT (3) 26.3 0.0263 E12.5 retina CCGGCCGACC 1.9 0.0019 E14.5 retina CCGGCCGACC 5.5 0.0055 E14.5 retina AGAAGTGTTT (3) 3.6 0.0036 E14.5 retina CACAAGATGT (2) 1.8 0.0018 E14.5 retina GCGGACGACG (3) 1.8 0.0018 E16.5 retina AGAAGTGTTT (3) 10.9 0.0109 E16.5 retina CCGGCCGACC 7.2 0.0072 E16.5 retina GCGGACGACG (3) 1.8 0.0018 E16.5 retina TCTTTTGGTT (4) 1.8 0.0018 E18.5 retina AGAAGTGTTT (3) 10.9 0.0109 E18.5 retina AAGGGAAGAA (2) 1.8 0.0018 P0.5 retina AGAAGTGTTT (3) 31.4 0.0314 P0.5 retina TCTTTTGGTT (4) 9.8 0.0098 P0.5 retina GCGGACGACG (3) 3.9 0.0039 P2.5 retina AGAAGTGTTT (3) 10.6 0.0106 P2.5 retina TCTTTTGGTT (4) 5.3 0.0053 P2.5 retina CCGGCCGACC 1.8 0.0018 P4.5 retina AGAAGTGTTT (3) 4 0.004 P4.5 retina CACAAGATGT (2) 2 0.002 P4.5 retina CCGGCCGACC 2 0.002 P4.5 retina TCTTTTGGTT (4) 2 0.002 P6.5 retina AGAAGTGTTT (3) 13.3 0.0133 P6.5 retina CCGGCCGACC 3.3 0.0033 P6.5 retina AAGGGAAGAA (2) 1.7 0.0017 P10.5 crx- retina CACAAGATGT (2) 1.9 0.0019 P10.5 crx- retina GCGGACGACG (3) 1.9 0.0019 P10.5 crx- retina TCTTTTGGTT (4) 1.9 0.0019 P10.5 crx+ retina AGAAGTGTTT (3) 3.8 0.0038 Adult retinal AGAAGTGTTT (3) 5.6 0.0056 Adult retinal GCGGACGACG (3) 1.9 0.0019 Adult retinal TCTTTTGGTT (4) 1.9 0.0019 ONL AAGGGAAGAA (2) 1.9 0.0019 ONL AATAAAAGCT (4) 1.9 0.0019 ONL CGGGGCGAGC (5) 1.9 0.0019 ONL TCTTTTGGTT (4) 1.9 0.0019