Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.34102	Odc1	ornithine decarboxylase, structural 1	12	12 6.0 cM	18263
Gene Ontology	carboxy-lyase activity | catalytic activity | lyase activity | ornithine decarboxylase activity | polyamine biosynthesis
Human Homolog	ODC1[ornithine decarboxylase 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 134 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TAATAAAAAT (10) 32.6 0.0326 P8 Cb GC ATACTAACGT 11.4 0.0114 P8 Cb GC TGTGACCCCC (3) 11.4 0.0114 P8 Cb GC GCCACTTCCT (7) 4.9 0.0049 P8 Cb GC GCAATTTTTA (2) 1.6 0.0016 P8 Cb GC GGGGCAGGGG (7) 1.6 0.0016 Cb medulloblastoma TGTGACCCCC (3) 13.9 0.0139 Cb medulloblastoma TAATAAAAAT (10) 9.2 0.0092 Cb medulloblastoma ATACTAACGT 4.6 0.0046 Cb medulloblastoma GCCACTTCCT (7) 2.3 0.0023 Cb medulloblastoma TGGGCCGGAG 2.3 0.0023 Cb medulloblastoma TGGGGCCAGT (2) 2.3 0.0023 P8 GC+1d culture TAATAAAAAT (10) 30.8 0.0308 P8 GC+1d culture TGTGACCCCC (3) 25.1 0.0251 P8 GC+1d culture ATACTAACGT 21.7 0.0217 P8 GC+1d culture GCCACTTCCT (7) 8 0.008 P8 GC+1d culture TCTGAAAAGT (6) 2.3 0.0023 P8 GC+1d culture GCAATTTTTA (2) 1.1 0.0011 P8 GC+SHH+1d culture TAATAAAAAT (10) 60.9 0.0609 P8 GC+SHH+1d culture TGTGACCCCC (3) 22.2 0.0222 P8 GC+SHH+1d culture ATACTAACGT 12.9 0.0129 P8 GC+SHH+1d culture GCCACTTCCT (7) 8.2 0.0082 P8 GC+SHH+1d culture GCAATTTTTA (2) 3.5 0.0035 P8 GC+SHH+1d culture TGGGGCCAGT (2) 2.3 0.0023 P8 GC+SHH+1d culture TGTCACATAA (3) 1.2 0.0012 3T3 fibroblasts ATACTAACGT 10.5 0.0105 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 3T3 fibroblasts TGTGACCCCC (3) 3.5 0.0035 E15 cortex TGTGACCCCC (3) 19.8 0.0198 E15 cortex ATACTAACGT 14.8 0.0148 E15 cortex GCCACTTCCT (7) 4.9 0.0049 E15 cortex GTCATAGCTG (590) 4.9 0.0049 E15 cortex TAATAAAAAT (10) 4.9 0.0049 P1 cortex ATACTAACGT 13.6 0.0136 P1 cortex GAATTTTTAT (5) 4.5 0.0045 P1 cortex TAATAAAAAT (10) 4.5 0.0045 P1 cortex TCTGTGCCCA (7) 4.5 0.0045 Hypothalamus TGTGACCCCC (3) 19.9 0.0199 Hypothalamus TAATAAAAAT (10) 7.2 0.0072 Hypothalamus TGTCACATAA (3) 5.4 0.0054 Hypothalamus ATACTAACGT 1.8 0.0018 Hypothalamus CAAAACGTGT 1.8 0.0018 Hypothalamus GCCACTTCCT (7) 1.8 0.0018 Hypothalamus TAATACAAAT 1.8 0.0018 Hypothalamus TGGGGCCAGT (2) 1.8 0.0018 E12.5 retina ATACTAACGT 26.3 0.0263 E12.5 retina TAATAAAAAT (10) 18.8 0.0188 E12.5 retina GCCACTTCCT (7) 9.4 0.0094 E12.5 retina TGTGACCCCC (3) 9.4 0.0094 E12.5 retina GAATTTTTAT (5) 3.8 0.0038 E12.5 retina GCAATTTTTA (2) 1.9 0.0019 E12.5 retina TCTTGTGCCC (2) 1.9 0.0019 E14.5 retina TAATAAAAAT (10) 72.9 0.0729 E14.5 retina TGTGACCCCC (3) 23.7 0.0237 E14.5 retina ATACTAACGT 7.3 0.0073 E14.5 retina GCCACTTCCT (7) 3.6 0.0036 E14.5 retina CGGAATTTTT (2) 1.8 0.0018 E14.5 retina TAATACAAAT 1.8 0.0018 E14.5 retina TCTGTGCCCA (7) 1.8 0.0018 E14.5 retina TCTTGTGCCC (2) 1.8 0.0018 E14.5 retina TGTCACATAA (3) 1.8 0.0018 E16.5 retina TAATAAAAAT (10) 48.9 0.0489 E16.5 retina TGTGACCCCC (3) 18.1 0.0181 E16.5 retina ATACTAACGT 12.7 0.0127 E16.5 retina GCCACTTCCT (7) 3.6 0.0036 E16.5 retina CAAAACGTGT 1.8 0.0018 E16.5 retina CGGAATTTTT (2) 1.8 0.0018 E16.5 retina TAATACAAAT 1.8 0.0018 E16.5 retina TCTGAAAAGT (6) 1.8 0.0018 E18.5 retina TAATAAAAAT (10) 70.9 0.0709 E18.5 retina TGTGACCCCC (3) 14.6 0.0146 E18.5 retina ATACTAACGT 12.7 0.0127 E18.5 retina CGGAATTTTT (2) 1.8 0.0018 E18.5 retina GCCACTTCCT (7) 1.8 0.0018 E18.5 retina TAATACAAAT 1.8 0.0018 E18.5 retina TGGGCCGGAG 1.8 0.0018 P0.5 retina TGTGACCCCC (3) 17.7 0.0177 P0.5 retina ATACTAACGT 15.7 0.0157 P0.5 retina TAATAAAAAT (10) 5.9 0.0059 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina GCAATTTTTA (2) 2 0.002 P0.5 retina GGACAGGATT 2 0.002 P0.5 retina TCTGTGCCCA (7) 2 0.002 P0.5 retina TGGGGCCAGT (2) 2 0.002 P2.5 retina TAATAAAAAT (10) 49.3 0.0493 P2.5 retina TGTGACCCCC (3) 21.1 0.0211 P2.5 retina ATACTAACGT 5.3 0.0053 P2.5 retina GCCACTTCCT (7) 5.3 0.0053 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P2.5 retina TAATACAAAT 1.8 0.0018 P2.5 retina TCTGTGCCCA (7) 1.8 0.0018 P2.5 retina TCTTGTGCCC (2) 1.8 0.0018 P4.5 retina TAATAAAAAT (10) 25.8 0.0258 P4.5 retina TGTGACCCCC (3) 15.9 0.0159 P4.5 retina ATACTAACGT 13.9 0.0139 P4.5 retina GCAATTTTTA (2) 4 0.004 P4.5 retina GGACAGGATT 4 0.004 P4.5 retina GCCACTTCCT (7) 2 0.002 P4.5 retina GTCATAGCTG (590) 2 0.002 P4.5 retina TAATACAAAT 2 0.002 P4.5 retina TCTGTGCCCA (7) 2 0.002 P6.5 retina TAATAAAAAT (10) 41.7 0.0417 P6.5 retina TGTGACCCCC (3) 28.3 0.0283 P6.5 retina ATACTAACGT 15 0.015 P6.5 retina GGACAGGATT 3.3 0.0033 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina CAAAACGTGT 1.7 0.0017 P6.5 retina GGGGCAGGGG (7) 1.7 0.0017 P6.5 retina TCTGAAAAGT (6) 1.7 0.0017 P10.5 crx- retina ATACTAACGT 11.1 0.0111 P10.5 crx- retina TGTGACCCCC (3) 9.3 0.0093 P10.5 crx- retina TAATAAAAAT (10) 5.6 0.0056 P10.5 crx- retina GCAATTTTTA (2) 3.7 0.0037 P10.5 crx- retina GCCACTTCCT (7) 3.7 0.0037 P10.5 crx- retina TCTGTGCCCA (7) 3.7 0.0037 P10.5 crx- retina TAATACAAAT 1.9 0.0019 P10.5 crx- retina TGTCACATAA (3) 1.9 0.0019 P10.5 crx+ retina TAATAAAAAT (10) 28.8 0.0288 P10.5 crx+ retina TGTGACCCCC (3) 13.5 0.0135 P10.5 crx+ retina ATACTAACGT 3.8 0.0038 P10.5 crx+ retina TCTGAAAAGT (6) 1.9 0.0019 P10.5 crx+ retina TCTGTGCCCA (7) 1.9 0.0019 P10.5 crx+ retina TGGGGCCAGT (2) 1.9 0.0019 Adult retinal TGTGACCCCC (3) 24.1 0.0241 Adult retinal TAATAAAAAT (10) 14.8 0.0148 Adult retinal ATACTAACGT 7.4 0.0074 Adult retinal GTCATAGCTG (590) 1.9 0.0019 ONL TAATAAAAAT (10) 59.4 0.0594 ONL TGTGACCCCC (3) 7.7 0.0077 ONL ATACTAACGT 5.7 0.0057 ONL GTCATAGCTG (590) 5.7 0.0057 ONL GGGGCAGGGG (7) 1.9 0.0019 ONL TCTGTGCCCA (7) 1.9 0.0019 ONL TGGGCCGGAG 1.9 0.0019