Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.34411	Pdk1	pyruvate dehydrogenase kinase, isoenzyme 1	2		228026
Gene Ontology	[pyruvate dehydrogenase (lipoamide)] kinase activity | ATP binding | extracellular space | kinase activity | mitochondrion | mitochondrion | protein-histidine kinase activity | signal transduction | transferase activity
Human Homolog	PDK1[pyruvate dehydrogenase kinase, isoenzyme 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 106 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TATTTTTCTA (13) 4.9 0.0049 P8 Cb GC CTCCTGAGTG (3) 3.3 0.0033 P8 Cb GC GCACCATTTT (2) 3.3 0.0033 P8 Cb GC GCCAGGCCCA (4) 1.6 0.0016 P8 Cb GC GCCCAGGGGG (6) 1.6 0.0016 P8 Cb GC GGAGGCAGAG (9) 1.6 0.0016 Cb medulloblastoma CCCTGAATAA (5) 4.6 0.0046 Cb medulloblastoma GGAGGCAGAG (9) 2.3 0.0023 Cb medulloblastoma TATTTTTCTA (13) 2.3 0.0023 P8 GC+1d culture GCACCATTTT (2) 5.7 0.0057 P8 GC+1d culture TATTTTTCTA (13) 3.4 0.0034 P8 GC+1d culture CCCTGAATAA (5) 1.1 0.0011 P8 GC+1d culture GGAGGCAGAG (9) 1.1 0.0011 P8 GC+1d culture TATTTGGAAC (6) 1.1 0.0011 P8 GC+SHH+1d culture TATTTTTCTA (13) 10.5 0.0105 P8 GC+SHH+1d culture GCACCATTTT (2) 4.7 0.0047 P8 GC+SHH+1d culture TATTTGGAAC (6) 3.5 0.0035 P8 GC+SHH+1d culture CTCAGGGTGC (2) 2.3 0.0023 P8 GC+SHH+1d culture CTCCTGAGTG (3) 2.3 0.0023 P8 GC+SHH+1d culture AGAGAAAAAA (4) 1.2 0.0012 P8 GC+SHH+1d culture CCCTGAATAA (5) 1.2 0.0012 3T3 fibroblasts GCCCAGGGGG (6) 3.5 0.0035 3T3 fibroblasts GGAGGCAGAG (9) 3.5 0.0035 E15 cortex GAGCTAAGTC (3) 4.9 0.0049 E15 cortex GCCCAGGGGG (6) 4.9 0.0049 E15 cortex GGAGGCAGAG (9) 4.9 0.0049 P1 cortex CGCAACTTGG 13.6 0.0136 P1 cortex TATTTGGAAC (6) 9.1 0.0091 P1 cortex TATTTTTCTA (13) 9.1 0.0091 P1 cortex TACGGACCCT 4.5 0.0045 Hypothalamus GGAGGCAGAG (9) 7.2 0.0072 Hypothalamus CTCAGGGTGC (2) 1.8 0.0018 Hypothalamus GCCAGGCCCA (4) 1.8 0.0018 Hypothalamus TACGGACCCT 1.8 0.0018 Hypothalamus TATTTGGAAC (6) 1.8 0.0018 E12.5 retina TATTTTTCTA (13) 15 0.015 E12.5 retina AGAGAAAAAA (4) 3.8 0.0038 E12.5 retina GGAGGCAGAG (9) 3.8 0.0038 E12.5 retina TACGGACCCT 3.8 0.0038 E12.5 retina CTCCTGAGTG (3) 1.9 0.0019 E14.5 retina TATTTTTCTA (13) 16.4 0.0164 E14.5 retina GGAGGCAGAG (9) 14.6 0.0146 E14.5 retina AGAGAAAAAA (4) 1.8 0.0018 E14.5 retina CCCTGAATAA (5) 1.8 0.0018 E14.5 retina CGCAACTTGG 1.8 0.0018 E14.5 retina GAGCTAAGTC (3) 1.8 0.0018 E14.5 retina GCACCATTTT (2) 1.8 0.0018 E14.5 retina GCCAGGCCCA (4) 1.8 0.0018 E16.5 retina GCACCATTTT (2) 5.4 0.0054 E16.5 retina CTCCTGAGTG (3) 3.6 0.0036 E16.5 retina CCCTGAATAA (5) 1.8 0.0018 E16.5 retina CTCAGGGTGC (2) 1.8 0.0018 E16.5 retina GGAGGCAGAG (9) 1.8 0.0018 E16.5 retina TATTTGGAAC (6) 1.8 0.0018 E16.5 retina TATTTTTCTA (13) 1.8 0.0018 E18.5 retina TATTTTTCTA (13) 5.5 0.0055 E18.5 retina CCCTGAATAA (5) 3.6 0.0036 E18.5 retina GCACCATTTT (2) 3.6 0.0036 E18.5 retina GGAGGCAGAG (9) 1.8 0.0018 P0.5 retina TATTTTTCTA (13) 7.9 0.0079 P0.5 retina CTCAGGGTGC (2) 3.9 0.0039 P0.5 retina GCGGCACACA (3) 2 0.002 P0.5 retina GGAGGCAGAG (9) 2 0.002 P2.5 retina GGAGGCAGAG (9) 7 0.007 P2.5 retina TATTTTTCTA (13) 7 0.007 P2.5 retina CTCCTGAGTG (3) 5.3 0.0053 P2.5 retina TACGGACCCT 5.3 0.0053 P2.5 retina CCCTGAATAA (5) 3.5 0.0035 P2.5 retina AGAGAAAAAA (4) 1.8 0.0018 P2.5 retina GCACCATTTT (2) 1.8 0.0018 P4.5 retina TATTTTTCTA (13) 7.9 0.0079 P4.5 retina AGAGAAAAAA (4) 5.9 0.0059 P4.5 retina CTCCTGAGTG (3) 5.9 0.0059 P4.5 retina GGAGGCAGAG (9) 5.9 0.0059 P4.5 retina TATTTGGAAC (6) 4 0.004 P4.5 retina GCGGCACACA (3) 2 0.002 P4.5 retina TACGGACCCT 2 0.002 P6.5 retina TATTTTTCTA (13) 11.7 0.0117 P6.5 retina GGAGGCAGAG (9) 5 0.005 P6.5 retina CTCAGGGTGC (2) 3.3 0.0033 P6.5 retina CTCCTGAGTG (3) 3.3 0.0033 P6.5 retina GCGGCACACA (3) 3.3 0.0033 P6.5 retina TATTTGGAAC (6) 1.7 0.0017 P10.5 crx- retina CTAGGTGGTG (3) 61.3 0.0613 P10.5 crx- retina GCACCATTTT (2) 3.7 0.0037 P10.5 crx- retina AGAGAAAAAA (4) 1.9 0.0019 P10.5 crx- retina CCCTGAATAA (5) 1.9 0.0019 P10.5 crx- retina CTCCTGAGTG (3) 1.9 0.0019 P10.5 crx- retina TATTTTTCTA (13) 1.9 0.0019 P10.5 crx+ retina GGAGGCAGAG (9) 9.6 0.0096 P10.5 crx+ retina CCCTGAATAA (5) 5.8 0.0058 P10.5 crx+ retina TACGGACCCT 5.8 0.0058 P10.5 crx+ retina GAGCTAAGTC (3) 1.9 0.0019 P10.5 crx+ retina GCCCAGGGGG (6) 1.9 0.0019 Adult retinal CCCTGAATAA (5) 7.4 0.0074 Adult retinal CTCAGGGTGC (2) 5.6 0.0056 Adult retinal GGAGGCAGAG (9) 5.6 0.0056 Adult retinal TATTTTTCTA (13) 5.6 0.0056 Adult retinal CGCAACTTGG 1.9 0.0019 Adult retinal TACGGACCCT 1.9 0.0019 ONL GGAGGCAGAG (9) 5.7 0.0057 ONL CCCTGAATAA (5) 3.8 0.0038 ONL GCGGCACACA (3) 3.8 0.0038 ONL CTCCTGAGTG (3) 1.9 0.0019 ONL TACGGACCCT 1.9 0.0019 ONL TATTTTTCTA (13) 1.9 0.0019