Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.347976	Ndufab1	NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	7		70316
Gene Ontology	acyl carrier activity | calcium ion binding | cofactor binding | extracellular space | fatty acid biosynthesis | membrane fraction | mitochondrion | mitochondrion | NADH dehydrogenase (ubiquinone) activity | oxidoreductase activity | respiratory chain complex I (sensu Eukarya)
Human Homolog	NDUFAB1[NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 86 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTGGTTCACA (32) 14.7 0.0147 P8 Cb GC GAAGACGAAT (3) 8.2 0.0082 P8 Cb GC TGTGAGCCTG (5) 6.5 0.0065 P8 Cb GC ACTTCTGTTC (5) 3.3 0.0033 P8 Cb GC TGGATCGTTT 3.3 0.0033 P8 Cb GC CTGTGGGCCT (3) 1.6 0.0016 P8 Cb GC GGCAAAAAAA (17) 1.6 0.0016 Cb medulloblastoma GGCAAAAAAA (17) 11.6 0.0116 Cb medulloblastoma GTGGTTCACA (32) 11.6 0.0116 Cb medulloblastoma GAAGACGAAT (3) 6.9 0.0069 Cb medulloblastoma TGTGAGCCTG (5) 6.9 0.0069 Cb medulloblastoma CTGTGGGCCT (3) 2.3 0.0023 Cb medulloblastoma TTTTATAAAA (5) 2.3 0.0023 P8 GC+1d culture GTGGTTCACA (32) 18.3 0.0183 P8 GC+1d culture GAAGACGAAT (3) 8 0.008 P8 GC+1d culture TGTGAGCCTG (5) 5.7 0.0057 P8 GC+1d culture TTTTATAAAA (5) 2.3 0.0023 P8 GC+SHH+1d culture GTGGTTCACA (32) 31.6 0.0316 P8 GC+SHH+1d culture GAAGACGAAT (3) 9.4 0.0094 P8 GC+SHH+1d culture TTTTATAAAA (5) 4.7 0.0047 P8 GC+SHH+1d culture GGCAAAAAAA (17) 1.2 0.0012 3T3 fibroblasts GTGGTTCACA (32) 17.5 0.0175 3T3 fibroblasts GAAGACGAAT (3) 3.5 0.0035 E15 cortex GTGGTTCACA (32) 4.9 0.0049 E15 cortex TGTGAGCCTG (5) 4.9 0.0049 P1 cortex GTGGTTCACA (32) 27.3 0.0273 P1 cortex TTTTATAAAA (5) 9.1 0.0091 Hypothalamus GTGGTTCACA (32) 12.7 0.0127 Hypothalamus GAAGACGAAT (3) 9.1 0.0091 Hypothalamus GCCATAATAA (2) 5.4 0.0054 Hypothalamus GGCAAAAAAA (17) 3.6 0.0036 Hypothalamus TGTGAGCCTG (5) 1.8 0.0018 E12.5 retina GTGGTTCACA (32) 28.2 0.0282 E12.5 retina GAAGACGAAT (3) 7.5 0.0075 E12.5 retina AAGAGCTGGA (7) 1.9 0.0019 E12.5 retina TGTGAGCCTG (5) 1.9 0.0019 E12.5 retina TTTTATAAAA (5) 1.9 0.0019 E14.5 retina GTGGTTCACA (32) 51 0.051 E14.5 retina GAAGACGAAT (3) 5.5 0.0055 E14.5 retina TGTGAGCCTG (5) 5.5 0.0055 E14.5 retina GGCAAAAAAA (17) 3.6 0.0036 E14.5 retina TGGATCGTTT 1.8 0.0018 E14.5 retina TTTTATAAAA (5) 1.8 0.0018 E16.5 retina GTGGTTCACA (32) 39.8 0.0398 E16.5 retina GAAGACGAAT (3) 9.1 0.0091 E16.5 retina TGTGAGCCTG (5) 5.4 0.0054 E16.5 retina TTTTATAAAA (5) 3.6 0.0036 E16.5 retina ACTTCTGTTC (5) 1.8 0.0018 E16.5 retina CTGTGGGCCT (3) 1.8 0.0018 E18.5 retina GTGGTTCACA (32) 40 0.04 E18.5 retina TTTTATAAAA (5) 10.9 0.0109 E18.5 retina GAAGACGAAT (3) 3.6 0.0036 P0.5 retina GTGGTTCACA (32) 35.3 0.0353 P0.5 retina GAAGACGAAT (3) 13.7 0.0137 P0.5 retina TGTGAGCCTG (5) 5.9 0.0059 P0.5 retina AAGAGCTGGA (7) 2 0.002 P0.5 retina TTTTATAAAA (5) 2 0.002 P2.5 retina TGTGAGCCTG (5) 15.8 0.0158 P2.5 retina GTGGTTCACA (32) 12.3 0.0123 P2.5 retina TTTTATAAAA (5) 12.3 0.0123 P2.5 retina AAGAGCTGGA (7) 1.8 0.0018 P4.5 retina GTGGTTCACA (32) 33.7 0.0337 P4.5 retina TTTTATAAAA (5) 7.9 0.0079 P4.5 retina GAAGACGAAT (3) 5.9 0.0059 P4.5 retina GCCATAATAA (2) 4 0.004 P4.5 retina GGCAAAAAAA (17) 2 0.002 P4.5 retina TGTGAGCCTG (5) 2 0.002 P6.5 retina GTGGTTCACA (32) 25 0.025 P6.5 retina TTTTATAAAA (5) 6.7 0.0067 P6.5 retina GAAGACGAAT (3) 5 0.005 P6.5 retina TGTGAGCCTG (5) 5 0.005 P6.5 retina GGCAAAAAAA (17) 1.7 0.0017 P10.5 crx- retina GTGGTTCACA (32) 20.4 0.0204 P10.5 crx- retina GAAGACGAAT (3) 16.7 0.0167 P10.5 crx- retina GGCAAAAAAA (17) 1.9 0.0019 P10.5 crx- retina TTTTATAAAA (5) 1.9 0.0019 P10.5 crx+ retina GTGGTTCACA (32) 32.7 0.0327 P10.5 crx+ retina GAAGACGAAT (3) 7.7 0.0077 P10.5 crx+ retina GGCAAAAAAA (17) 3.8 0.0038 P10.5 crx+ retina TGTGAGCCTG (5) 1.9 0.0019 Adult retinal GTGGTTCACA (32) 33.3 0.0333 Adult retinal CTGTGGGCCT (3) 1.9 0.0019 Adult retinal GAAGACGAAT (3) 1.9 0.0019 ONL GTGGTTCACA (32) 32.6 0.0326 ONL GAAGACGAAT (3) 5.7 0.0057 ONL TTTTATAAAA (5) 5.7 0.0057