Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.34977
2610012C04Rik
RIKEN cDNA 2610012C04 gene
1
70299
Mm.34977
Nav1
neuron navigator 1
1
215690
Mm.34977
BC028801
cDNA sequence BC028801
408054
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 135 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CCTTTAATCC (
355
)
52.2
0.0522
P8 Cb GC
TCTCCATCCA
(
3
)
6.5
0.0065
P8 Cb GC
CCTTTAATCT (
38
)
4.9
0.0049
P8 Cb GC
TGTTTGTTCT (
9
)
4.9
0.0049
P8 Cb GC
GAGAGAGCCC
(
3
)
3.3
0.0033
P8 Cb GC
GCAAAGAGCA
(
7
)
3.3
0.0033
P8 Cb GC
GTCTGGGGGG (
9
)
3.3
0.0033
P8 Cb GC
AACATCATCC (
8
)
1.6
0.0016
P8 Cb GC
GCAAGGCTCA
(
4
)
1.6
0.0016
P8 Cb GC
TGGTTTAACA
(
3
)
1.6
0.0016
Cb medulloblastoma
CCTTTAATCC (
355
)
41.6
0.0416
Cb medulloblastoma
GTCTGGGGGG (
9
)
11.6
0.0116
Cb medulloblastoma
AACATCATCC (
8
)
2.3
0.0023
Cb medulloblastoma
CTACTGAACT (
5
)
2.3
0.0023
Cb medulloblastoma
GCAAAAAACA (
7
)
2.3
0.0023
Cb medulloblastoma
TCTCCATCCA
(
3
)
2.3
0.0023
P8 GC+1d culture
CCTTTAATCC (
355
)
32
0.032
P8 GC+1d culture
TCTCCATCCA
(
3
)
12.6
0.0126
P8 GC+1d culture
GTCTGGGGGG (
9
)
8
0.008
P8 GC+1d culture
AACATCATCC (
8
)
4.6
0.0046
P8 GC+1d culture
GCAAGGCTCA
(
4
)
3.4
0.0034
P8 GC+1d culture
GCAAAGAGCA
(
7
)
2.3
0.0023
P8 GC+1d culture
CCTTTAATCT (
38
)
1.1
0.0011
P8 GC+1d culture
TGTTTGTTCT (
9
)
1.1
0.0011
P8 GC+SHH+1d culture
CCTTTAATCC (
355
)
25.8
0.0258
P8 GC+SHH+1d culture
AACATCATCC (
8
)
7
0.007
P8 GC+SHH+1d culture
CCTTTAATCT (
38
)
3.5
0.0035
P8 GC+SHH+1d culture
GCTTTAATCC (
11
)
3.5
0.0035
P8 GC+SHH+1d culture
TCTCCATCCA
(
3
)
3.5
0.0035
P8 GC+SHH+1d culture
GCAAAGAGCA
(
7
)
2.3
0.0023
P8 GC+SHH+1d culture
GCAAGGCTCA
(
4
)
2.3
0.0023
P8 GC+SHH+1d culture
AAAAGTCAAT
(
5
)
1.2
0.0012
P8 GC+SHH+1d culture
GAGAGAGCCC
(
3
)
1.2
0.0012
P8 GC+SHH+1d culture
GTCTGGGGGG (
9
)
1.2
0.0012
3T3 fibroblasts
CCTTTAATCC (
355
)
70.1
0.0701
3T3 fibroblasts
CCTTTAATCT (
38
)
10.5
0.0105
3T3 fibroblasts
GCAAGGCTCA
(
4
)
7
0.007
3T3 fibroblasts
GCAAAGAGCA
(
7
)
3.5
0.0035
E15 cortex
CCTTTAATCC (
355
)
54.4
0.0544
E15 cortex
GCAAGGCTCA
(
4
)
9.9
0.0099
E15 cortex
GCAAAGAGCA
(
7
)
4.9
0.0049
E15 cortex
GTCTGGGGGG (
9
)
4.9
0.0049
E15 cortex
TGGTTTAACA
(
3
)
4.9
0.0049
P1 cortex
CCTTTAATCC (
355
)
154.5
0.1545
P1 cortex
AACATCATCC (
8
)
13.6
0.0136
P1 cortex
GCAAGGCTCA
(
4
)
9.1
0.0091
P1 cortex
GGAGGTGTCT (
4
)
9.1
0.0091
P1 cortex
TCTCCATCCA
(
3
)
9.1
0.0091
P1 cortex
AAAAGTCAAT
(
5
)
4.5
0.0045
P1 cortex
CCTTTAATCT (
38
)
4.5
0.0045
P1 cortex
GCTTTAATCC (
11
)
4.5
0.0045
P1 cortex
GTCTGGGGGG (
9
)
4.5
0.0045
P1 cortex
TGTTTGTTCT (
9
)
4.5
0.0045
Hypothalamus
CCTTTAATCC (
355
)
19.9
0.0199
Hypothalamus
AACATCATCC (
8
)
9.1
0.0091
Hypothalamus
GTCTGGGGGG (
9
)
5.4
0.0054
Hypothalamus
CCTTTAATCT (
38
)
1.8
0.0018
Hypothalamus
CTACTGAACT (
5
)
1.8
0.0018
Hypothalamus
TCTCCATCCA
(
3
)
1.8
0.0018
E12.5 retina
CCTTTAATCC (
355
)
75.1
0.0751
E12.5 retina
AACATCATCC (
8
)
13.1
0.0131
E12.5 retina
CCTTTAATCT (
38
)
1.9
0.0019
E14.5 retina
CCTTTAATCC (
355
)
120.3
0.1203
E14.5 retina
CCTTTAATCT (
38
)
12.8
0.0128
E14.5 retina
GCTTTAATCC (
11
)
1.8
0.0018
E14.5 retina
TCTCCATCCA
(
3
)
1.8
0.0018
E14.5 retina
TGTTTGTTCT (
9
)
1.8
0.0018
E16.5 retina
CCTTTAATCC (
355
)
68.8
0.0688
E16.5 retina
AACATCATCC (
8
)
5.4
0.0054
E16.5 retina
TCTCCATCCA
(
3
)
3.6
0.0036
E16.5 retina
GAGAGAGCCC
(
3
)
1.8
0.0018
E16.5 retina
GCAAAGAGCA
(
7
)
1.8
0.0018
E16.5 retina
GCAAGGCTCA
(
4
)
1.8
0.0018
E18.5 retina
CCTTTAATCC (
355
)
23.6
0.0236
E18.5 retina
AACATCATCC (
8
)
1.8
0.0018
E18.5 retina
GGAGGTGTCT (
4
)
1.8
0.0018
E18.5 retina
TCTCCATCCA
(
3
)
1.8
0.0018
E18.5 retina
TGTTTGTTCT (
9
)
1.8
0.0018
P0.5 retina
CCTTTAATCC (
355
)
72.6
0.0726
P0.5 retina
TCTCCATCCA
(
3
)
9.8
0.0098
P0.5 retina
AACATCATCC (
8
)
5.9
0.0059
P0.5 retina
GGAGGTGTCT (
4
)
5.9
0.0059
P0.5 retina
CCTTTAATCT (
38
)
2
0.002
P0.5 retina
GCAAAAAACA (
7
)
2
0.002
P0.5 retina
GCAAAGAGCA
(
7
)
2
0.002
P0.5 retina
GCAAGGCTCA
(
4
)
2
0.002
P0.5 retina
GCTTTAATCC (
11
)
2
0.002
P2.5 retina
CCTTTAATCC (
355
)
70.4
0.0704
P2.5 retina
TCTCCATCCA
(
3
)
5.3
0.0053
P2.5 retina
CCTTTAATCT (
38
)
3.5
0.0035
P2.5 retina
GCTTTAATCC (
11
)
3.5
0.0035
P2.5 retina
GTCTGGGGGG (
9
)
3.5
0.0035
P2.5 retina
AAAAGTCAAT
(
5
)
1.8
0.0018
P2.5 retina
AACATCATCC (
8
)
1.8
0.0018
P4.5 retina
CCTTTAATCC (
355
)
43.6
0.0436
P4.5 retina
GTCTGGGGGG (
9
)
9.9
0.0099
P4.5 retina
TCTCCATCCA
(
3
)
5.9
0.0059
P4.5 retina
CCTTTAATCT (
38
)
4
0.004
P4.5 retina
GCTTTAATCC (
11
)
4
0.004
P4.5 retina
TGTTTGTTCT (
9
)
4
0.004
P4.5 retina
GAGAGAGCCC
(
3
)
2
0.002
P4.5 retina
GCAAAAAACA (
7
)
2
0.002
P6.5 retina
CCTTTAATCC (
355
)
70
0.07
P6.5 retina
CCTTTAATCT (
38
)
11.7
0.0117
P6.5 retina
AACATCATCC (
8
)
3.3
0.0033
P6.5 retina
TCTCCATCCA
(
3
)
3.3
0.0033
P6.5 retina
GCAAGGCTCA
(
4
)
1.7
0.0017
P6.5 retina
GCTTTAATCC (
11
)
1.7
0.0017
P6.5 retina
TGTTTGTTCT (
9
)
1.7
0.0017
P10.5 crx- retina
CCTTTAATCC (
355
)
63.2
0.0632
P10.5 crx- retina
AACATCATCC (
8
)
5.6
0.0056
P10.5 crx- retina
TCTCCATCCA
(
3
)
3.7
0.0037
P10.5 crx- retina
GTCTGGGGGG (
9
)
1.9
0.0019
P10.5 crx- retina
TGTTTGTTCT (
9
)
1.9
0.0019
P10.5 crx+ retina
CCTTTAATCC (
355
)
38.4
0.0384
P10.5 crx+ retina
GTCTGGGGGG (
9
)
5.8
0.0058
P10.5 crx+ retina
AACATCATCC (
8
)
3.8
0.0038
P10.5 crx+ retina
GCTTTAATCC (
11
)
3.8
0.0038
P10.5 crx+ retina
GCAAAGAGCA
(
7
)
1.9
0.0019
P10.5 crx+ retina
TGTTTGTTCT (
9
)
1.9
0.0019
Adult retinal
CCTTTAATCC (
355
)
129.6
0.1296
Adult retinal
GTCTGGGGGG (
9
)
9.3
0.0093
Adult retinal
CCTTTAATCT (
38
)
7.4
0.0074
Adult retinal
AACATCATCC (
8
)
5.6
0.0056
Adult retinal
TGTTTGTTCT (
9
)
3.7
0.0037
Adult retinal
CTACTGAACT (
5
)
1.9
0.0019
Adult retinal
GCAAAGAGCA
(
7
)
1.9
0.0019
Adult retinal
GCTTTAATCC (
11
)
1.9
0.0019
Adult retinal
TCTCCATCCA
(
3
)
1.9
0.0019
Adult retinal
TGGTTTAACA
(
3
)
1.9
0.0019
ONL
CCTTTAATCC (
355
)
84.3
0.0843
ONL
CCTTTAATCT (
38
)
11.5
0.0115
ONL
AACATCATCC (
8
)
5.7
0.0057
ONL
TCTCCATCCA
(
3
)
3.8
0.0038
ONL
GCTTTAATCC (
11
)
1.9
0.0019
