Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.355601	E130013N09Rik	RIKEN cDNA E130013N09 gene	2		99358
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 126 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGTTGCTGG (369) 68.5 0.0685 P8 Cb GC TTTACTGTGT (3) 26.1 0.0261 P8 Cb GC TGTTTAAATG (2) 4.9 0.0049 P8 Cb GC CCTTACCGCT 1.6 0.0016 P8 Cb GC TCTTAAAAAA (9) 1.6 0.0016 P8 Cb GC TCTTAAATGT (4) 1.6 0.0016 Cb medulloblastoma TGGTTGCTGG (369) 113.3 0.1133 Cb medulloblastoma CCTTACCGCT 37 0.037 Cb medulloblastoma CTACTGAACT (5) 2.3 0.0023 Cb medulloblastoma TTGATTCTCA 2.3 0.0023 Cb medulloblastoma TTTACTGTGT (3) 2.3 0.0023 P8 GC+1d culture TGGTTGCTGG (369) 57.1 0.0571 P8 GC+1d culture GCTGGCAGGG (4) 5.7 0.0057 P8 GC+1d culture TTTACTGTGT (3) 3.4 0.0034 P8 GC+1d culture TCTTAAATGT (4) 2.3 0.0023 P8 GC+SHH+1d culture TGGTTGCTGG (369) 89 0.089 P8 GC+SHH+1d culture TTTACTGTGT (3) 10.5 0.0105 P8 GC+SHH+1d culture TGTTTAAATG (2) 9.4 0.0094 P8 GC+SHH+1d culture TCTTAAATGT (4) 4.7 0.0047 P8 GC+SHH+1d culture GCTGGCAGGG (4) 3.5 0.0035 P8 GC+SHH+1d culture TTTTCTGTGT (5) 1.2 0.0012 3T3 fibroblasts TGGTTGCTGG (369) 220.8 0.2208 3T3 fibroblasts GCTGGCAGGG (4) 3.5 0.0035 3T3 fibroblasts TTTACTGTGT (3) 3.5 0.0035 E15 cortex TGGTTGCTGG (369) 277.1 0.2771 E15 cortex CCTTACCGCT 4.9 0.0049 E15 cortex GCTGGCAGGG (4) 4.9 0.0049 E15 cortex TTTACTGTGT (3) 4.9 0.0049 P1 cortex TGGTTGCTGG (369) 86.4 0.0864 P1 cortex CCTTACCGCT 18.2 0.0182 P1 cortex TTTACTGTGT (3) 13.6 0.0136 P1 cortex AAGTTTTAGT 4.5 0.0045 P1 cortex GCTGGCAGGG (4) 4.5 0.0045 P1 cortex TTCTTTCACA 4.5 0.0045 P1 cortex TTTTCTGTGT (5) 4.5 0.0045 Hypothalamus TGGTTGCTGG (369) 349.6 0.3496 Hypothalamus CCTTACCGCT 85.1 0.0851 Hypothalamus TTTACTGTGT (3) 21.7 0.0217 Hypothalamus AGAGTCTCCA 7.2 0.0072 Hypothalamus AAGTTTTAGT 3.6 0.0036 Hypothalamus TGTCTAAATG 3.6 0.0036 Hypothalamus AATGGGTGGC (5) 1.8 0.0018 Hypothalamus CTACTGAACT (5) 1.8 0.0018 Hypothalamus TCTTAAATGT (4) 1.8 0.0018 Hypothalamus TTCTTTCACA 1.8 0.0018 E12.5 retina TGGTTGCTGG (369) 157.7 0.1577 E12.5 retina TTTACTGTGT (3) 22.5 0.0225 E12.5 retina TGTTTAAATG (2) 11.3 0.0113 E12.5 retina TCTTAAATGT (4) 5.6 0.0056 E12.5 retina CCTTACCGCT 1.9 0.0019 E14.5 retina TGGTTGCTGG (369) 936.5 0.9365 E14.5 retina TTTACTGTGT (3) 16.4 0.0164 E14.5 retina CCTTACCGCT 14.6 0.0146 E14.5 retina AAACTGAGCA (5) 1.8 0.0018 E14.5 retina TGTCTAAATG 1.8 0.0018 E16.5 retina TGGTTGCTGG (369) 767.9 0.7679 E16.5 retina CCTTACCGCT 19.9 0.0199 E16.5 retina TTTACTGTGT (3) 10.9 0.0109 E16.5 retina AATGGGTGGC (5) 3.6 0.0036 E16.5 retina TGTTTAAATG (2) 3.6 0.0036 E16.5 retina AAACTGAGCA (5) 1.8 0.0018 E16.5 retina TTGATTCTCA 1.8 0.0018 E18.5 retina TGGTTGCTGG (369) 252.8 0.2528 E18.5 retina CCTTACCGCT 29.1 0.0291 E18.5 retina TTTACTGTGT (3) 16.4 0.0164 E18.5 retina TGTTTAAATG (2) 10.9 0.0109 E18.5 retina TCTTAAATGT (4) 3.6 0.0036 E18.5 retina TCTTAAAAAA (9) 1.8 0.0018 P0.5 retina TGGTTGCTGG (369) 190.4 0.1904 P0.5 retina CCTTACCGCT 23.6 0.0236 P0.5 retina TTCTTTCACA 3.9 0.0039 P0.5 retina AAACTGAGCA (5) 2 0.002 P0.5 retina AAGTTTTAGT 2 0.002 P0.5 retina AATGGGTGGC (5) 2 0.002 P0.5 retina TGTTTAAATG (2) 2 0.002 P2.5 retina TGGTTGCTGG (369) 165.4 0.1654 P2.5 retina CCTTACCGCT 17.6 0.0176 P2.5 retina TGTTTAAATG (2) 12.3 0.0123 P2.5 retina TTTACTGTGT (3) 8.8 0.0088 P2.5 retina TCTTAAAAAA (9) 3.5 0.0035 P2.5 retina TTTTCTGTGT (5) 3.5 0.0035 P2.5 retina TCTTAAATGT (4) 1.8 0.0018 P2.5 retina TTCTTTCACA 1.8 0.0018 P2.5 retina TTGATTCTCA 1.8 0.0018 P4.5 retina TGGTTGCTGG (369) 150.6 0.1506 P4.5 retina CCTTACCGCT 17.8 0.0178 P4.5 retina TTTACTGTGT (3) 7.9 0.0079 P4.5 retina TGTTTAAATG (2) 5.9 0.0059 P4.5 retina TCTTAAATGT (4) 4 0.004 P4.5 retina AAACTGAGCA (5) 2 0.002 P4.5 retina GCTGGCAGGG (4) 2 0.002 P4.5 retina TCTTAAAAAA (9) 2 0.002 P4.5 retina TGTCTAAATG 2 0.002 P6.5 retina TGGTTGCTGG (369) 156.7 0.1567 P6.5 retina CCTTACCGCT 28.3 0.0283 P6.5 retina TTTACTGTGT (3) 5 0.005 P6.5 retina TCTTAAATGT (4) 3.3 0.0033 P6.5 retina AAACTGAGCA (5) 1.7 0.0017 P6.5 retina GCTGGCAGGG (4) 1.7 0.0017 P6.5 retina TCTTAAAAAA (9) 1.7 0.0017 P10.5 crx- retina TGGTTGCTGG (369) 280.5 0.2805 P10.5 crx- retina CCTTACCGCT 68.7 0.0687 P10.5 crx- retina AAACTGAGCA (5) 3.7 0.0037 P10.5 crx- retina TGTCTAAATG 3.7 0.0037 P10.5 crx- retina AGAGTCTCCA 1.9 0.0019 P10.5 crx- retina TCTTAAATGT (4) 1.9 0.0019 P10.5 crx+ retina TGGTTGCTGG (369) 101.9 0.1019 P10.5 crx+ retina CCTTACCGCT 50 0.05 P10.5 crx+ retina TTTACTGTGT (3) 9.6 0.0096 P10.5 crx+ retina AGAGTCTCCA 1.9 0.0019 P10.5 crx+ retina GCTGGCAGGG (4) 1.9 0.0019 Adult retinal TGGTTGCTGG (369) 214.8 0.2148 Adult retinal CCTTACCGCT 81.5 0.0815 Adult retinal TTTACTGTGT (3) 9.3 0.0093 Adult retinal AAGTTTTAGT 3.7 0.0037 Adult retinal AGAGTCTCCA 3.7 0.0037 Adult retinal AATGGGTGGC (5) 1.9 0.0019 Adult retinal CTACTGAACT (5) 1.9 0.0019 Adult retinal TCTTAAAAAA (9) 1.9 0.0019 Adult retinal TGTCTAAATG 1.9 0.0019 ONL TGGTTGCTGG (369) 398.4 0.3984 ONL TTTACTGTGT (3) 11.5 0.0115 ONL CCTTACCGCT 7.7 0.0077 ONL GCTGGCAGGG (4) 1.9 0.0019 ONL TCTTAAAAAA (9) 1.9 0.0019 ONL TCTTAAATGT (4) 1.9 0.0019