Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.3571
Usp5
ubiquitin specific protease 5 (isopeptidase T)
6
6 60.2 cM
22225
Human Homolog
USP5[ubiquitin specific protease 5 (isopeptidase T)]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 70 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
TGTGTGTGTG (
115
)
27.7
0.0277
P8 Cb GC
ATGTGAATAA
(
3
)
14.7
0.0147
P8 Cb GC
TATTTTGGCA
(
3
)
3.3
0.0033
P8 Cb GC
GGTCAGTGTG (
2
)
1.6
0.0016
Cb medulloblastoma
TGTGTGTGTG (
115
)
30.1
0.0301
Cb medulloblastoma
ATGTGAATAA
(
3
)
9.2
0.0092
Cb medulloblastoma
GGTTCTGGGA (
5
)
2.3
0.0023
Cb medulloblastoma
TATTTTGGCA
(
3
)
2.3
0.0023
P8 GC+1d culture
TGTGTGTGTG (
115
)
27.4
0.0274
P8 GC+1d culture
ATGTGAATAA
(
3
)
11.4
0.0114
P8 GC+1d culture
GGTCAGTGTG (
2
)
2.3
0.0023
P8 GC+SHH+1d culture
TGTGTGTGTG (
115
)
28.1
0.0281
P8 GC+SHH+1d culture
ATGTGAATAA
(
3
)
16.4
0.0164
P8 GC+SHH+1d culture
CTTTCAACCT (
3
)
1.2
0.0012
P8 GC+SHH+1d culture
GGTCAGTGTG (
2
)
1.2
0.0012
3T3 fibroblasts
TGTGTGTGTG (
115
)
28
0.028
3T3 fibroblasts
GGTCAGTGTG (
2
)
3.5
0.0035
3T3 fibroblasts
GGTTCTGGGA (
5
)
3.5
0.0035
P1 cortex
TGTGTGTGTG (
115
)
18.2
0.0182
P1 cortex
GGTCAGTGTG (
2
)
9.1
0.0091
P1 cortex
CCAAAATACA
4.5
0.0045
Hypothalamus
TGTGTGTGTG (
115
)
25.4
0.0254
Hypothalamus
ATGTGAATAA
(
3
)
9.1
0.0091
Hypothalamus
GGATGGGACA (
5
)
5.4
0.0054
Hypothalamus
GGTCAGTGTG (
2
)
1.8
0.0018
E12.5 retina
TGTGTGTGTG (
115
)
43.2
0.0432
E12.5 retina
ATGTGAATAA
(
3
)
15
0.015
E12.5 retina
GGTCAGTGTG (
2
)
3.8
0.0038
E14.5 retina
TGTGTGTGTG (
115
)
54.7
0.0547
E14.5 retina
ATGTGAATAA
(
3
)
16.4
0.0164
E14.5 retina
GGTTCTGGGA (
5
)
1.8
0.0018
E16.5 retina
TGTGTGTGTG (
115
)
39.8
0.0398
E16.5 retina
ATGTGAATAA
(
3
)
19.9
0.0199
E16.5 retina
CTTTCAACCT (
3
)
1.8
0.0018
E16.5 retina
GGTCAGTGTG (
2
)
1.8
0.0018
E18.5 retina
TGTGTGTGTG (
115
)
47.3
0.0473
E18.5 retina
ATGTGAATAA
(
3
)
25.5
0.0255
E18.5 retina
GGATGGGACA (
5
)
1.8
0.0018
E18.5 retina
TATTTTGGCA
(
3
)
1.8
0.0018
P0.5 retina
TGTGTGTGTG (
115
)
21.6
0.0216
P0.5 retina
ATGTGAATAA
(
3
)
7.9
0.0079
P0.5 retina
TATTTTGGCA
(
3
)
3.9
0.0039
P0.5 retina
GGTCAGTGTG (
2
)
2
0.002
P0.5 retina
GGTTCTGGGA (
5
)
2
0.002
P2.5 retina
TGTGTGTGTG (
115
)
35.2
0.0352
P2.5 retina
ATGTGAATAA
(
3
)
10.6
0.0106
P4.5 retina
TGTGTGTGTG (
115
)
47.6
0.0476
P4.5 retina
ATGTGAATAA
(
3
)
15.9
0.0159
P6.5 retina
TGTGTGTGTG (
115
)
41.7
0.0417
P6.5 retina
ATGTGAATAA
(
3
)
15
0.015
P6.5 retina
GGTCAGTGTG (
2
)
5
0.005
P6.5 retina
CCAAAATACA
1.7
0.0017
P6.5 retina
GGTTCTGGGA (
5
)
1.7
0.0017
P6.5 retina
TATTTTGGCA
(
3
)
1.7
0.0017
P10.5 crx- retina
TGTGTGTGTG (
115
)
59.4
0.0594
P10.5 crx- retina
ATGTGAATAA
(
3
)
13
0.013
P10.5 crx- retina
GGTCAGTGTG (
2
)
3.7
0.0037
P10.5 crx- retina
CTTTCAACCT (
3
)
1.9
0.0019
P10.5 crx- retina
TATTTTGGCA
(
3
)
1.9
0.0019
P10.5 crx+ retina
TGTGTGTGTG (
115
)
44.2
0.0442
P10.5 crx+ retina
ATGTGAATAA
(
3
)
13.5
0.0135
P10.5 crx+ retina
CTTTCAACCT (
3
)
3.8
0.0038
Adult retinal
TGTGTGTGTG (
115
)
53.7
0.0537
Adult retinal
ATGTGAATAA
(
3
)
1.9
0.0019
Adult retinal
CTTTCAACCT (
3
)
1.9
0.0019
Adult retinal
GGTCAGTGTG (
2
)
1.9
0.0019
Adult retinal
GGTTCTGGGA (
5
)
1.9
0.0019
ONL
TGTGTGTGTG (
115
)
23
0.023
ONL
ATGTGAATAA
(
3
)
11.5
0.0115
ONL
CCAAAATACA
1.9
0.0019
