Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.3608	Pax6	paired box gene 6	2	2 E3 (2 58.0 cM)	18508
Gene Ontology	anterior/posterior pattern formation | axon guidance | brain development | cell differentiation | cell fate determination | development | DNA binding | eye morphogenesis (sensu Mammalia) | eye morphogenesis (sensu Mammalia) | eye photoreceptor cell development | metanephros development | nucleus | regulation of cell migration | regulation of transcription, DNA-dependent | salivary gland morphogenesis | transcription factor activity | transcription factor complex
Human Homolog	PAX6[paired box gene 6 (aniridia, keratitis)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 10 In Situ Hybridization Images

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SAGE Tags

Total 54 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CAATCATTTG CCAAAGCCTT GGTCCATAGT (2) TGATCGAGAG (2) 31 0.031 Cb medulloblastoma CCAAAGCCTT 4.6 0.0046 P8 GC+1d culture CAATCATTTG CCAAAGCCTT GATTTAAGAG 20.5 0.0205 P8 GC+SHH+1d culture CAATCATTTG CCAAAGCCTT GATTTAAGAG GGTCCATAGT (2) 18.7 0.0187 3T3 fibroblasts GGTCCATAGT (2) 3.5 0.0035 Hypothalamus GGAGCAGCTG 3.6 0.0036 E12.5 retina CAATCATTTG CCAAAGCCTT GATTTAAGAG GGTCCATAGT (2) 48.9 0.0489 E14.5 retina CAATCATTTG CCAAAGCCTT GATTTAAGAG TGATCGAGAG (2) 18.2 0.0182 E16.5 retina CAATCATTTG CCAAAGCCTT GATTTAAGAG 29 0.029 E18.5 retina CAATCATTTG CCAAAGCCTT GATTTAAGAG 32.7 0.0327 P0.5 retina CAATCATTTG CCAAAGCCTT GATTTAAGAG GGAGCAGCTG TGATCGAGAG (2) 47.2 0.0472 P2.5 retina CAATCATTTG CCAAAGCCTT GATTTAAGAG 28.2 0.0282 P4.5 retina CAATCATTTG CCAAAGCCTT GATTTAAGAG 37.6 0.0376 P6.5 retina CAATCATTTG CCAAAGCCTT GATTTAAGAG GGTCCATAGT (2) 21.7 0.0217 P10.5 crx- retina CAATCATTTG CCAAAGCCTT GATTTAAGAG TGATCGAGAG (2) 24.2 0.0242 P10.5 crx+ retina CCAAAGCCTT GGAGCAGCTG 13.4 0.0134 Adult retinal CAATCATTTG CCAAAGCCTT GATTTAAGAG 22.3 0.0223 ONL CAATCATTTG CCAAAGCCTT 7.6 0.0076