Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.368	Psmb4	proteasome (prosome, macropain) subunit, beta type 4	3	3 43.1 cM	19172
Gene Ontology	cytosol | endopeptidase activity | hydrolase activity | nucleus | peptidase activity | proteasome complex (sensu Eukarya) | proteasome core complex (sensu Eukarya) | ubiquitin-dependent protein catabolism
Human Homolog	PSMB4[proteasome (prosome, macropain) subunit, beta type, 4]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 85 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATCAGTGGCT (2) 21.2 0.0212 P8 Cb GC AGAGTGCTGT 3.3 0.0033 P8 Cb GC AGGCCGCTGG (3) 3.3 0.0033 P8 Cb GC GAAAGGGCTG (4) 3.3 0.0033 P8 Cb GC CTTGGTGTAG (2) 1.6 0.0016 Cb medulloblastoma ATCAGTGGCT (2) 11.6 0.0116 Cb medulloblastoma CCTGACTGAG (6) 2.3 0.0023 Cb medulloblastoma CTTGGTGTAG (2) 2.3 0.0023 Cb medulloblastoma GAAAGGGCTG (4) 2.3 0.0023 P8 GC+1d culture ATCAGTGGCT (2) 25.1 0.0251 P8 GC+1d culture GAAAGGGCTG (4) 6.8 0.0068 P8 GC+1d culture AGGCCGCTGG (3) 3.4 0.0034 P8 GC+1d culture CCTGACTGAG (6) 2.3 0.0023 P8 GC+1d culture ATCAAGGGGG (6) 1.1 0.0011 P8 GC+SHH+1d culture ATCAGTGGCT (2) 23.4 0.0234 P8 GC+SHH+1d culture GAAAGGGCTG (4) 7 0.007 P8 GC+SHH+1d culture AGGCCGCTGG (3) 3.5 0.0035 P8 GC+SHH+1d culture CCTGACTGAG (6) 3.5 0.0035 P8 GC+SHH+1d culture CTGGGCTCCT (9) 3.5 0.0035 P8 GC+SHH+1d culture AGAGTGCTGT 2.3 0.0023 3T3 fibroblasts ATCAGTGGCT (2) 10.5 0.0105 3T3 fibroblasts GAAAGGGCTG (4) 10.5 0.0105 3T3 fibroblasts AGGCCGCTGG (3) 3.5 0.0035 3T3 fibroblasts CTGGGCTCCT (9) 3.5 0.0035 E15 cortex ATCAGTGGCT (2) 9.9 0.0099 E15 cortex AGGCCGCTGG (3) 4.9 0.0049 E15 cortex CCTGACTGAG (6) 4.9 0.0049 P1 cortex GAAAGGGCTG (4) 18.2 0.0182 Hypothalamus ATCAGTGGCT (2) 9.1 0.0091 Hypothalamus AGAGTGCTGT 3.6 0.0036 Hypothalamus GAAAGGGCTG (4) 3.6 0.0036 Hypothalamus TGAGCGATGT 3.6 0.0036 E12.5 retina ATCAGTGGCT (2) 9.4 0.0094 E12.5 retina GAAAGGGCTG (4) 9.4 0.0094 E12.5 retina AGGCCGCTGG (3) 1.9 0.0019 E12.5 retina CCTGACTGAG (6) 1.9 0.0019 E12.5 retina CTGGGCTCCT (9) 1.9 0.0019 E14.5 retina ATCAGTGGCT (2) 12.8 0.0128 E14.5 retina GAAAGGGCTG (4) 7.3 0.0073 E14.5 retina ATCAAGGGGG (6) 1.8 0.0018 E14.5 retina CCTGACTGAG (6) 1.8 0.0018 E16.5 retina ATCAGTGGCT (2) 27.2 0.0272 E16.5 retina GAAAGGGCTG (4) 3.6 0.0036 E16.5 retina ATCAAGGGGG (6) 1.8 0.0018 E16.5 retina CTGGGCTCCT (9) 1.8 0.0018 E16.5 retina TGAGCGATGT 1.8 0.0018 E18.5 retina ATCAGTGGCT (2) 23.6 0.0236 E18.5 retina AGGCCGCTGG (3) 1.8 0.0018 E18.5 retina ATCAAGGGGG (6) 1.8 0.0018 P0.5 retina ATCAGTGGCT (2) 21.6 0.0216 P0.5 retina GAAAGGGCTG (4) 11.8 0.0118 P0.5 retina AGGCCGCTGG (3) 5.9 0.0059 P0.5 retina AGAGTGCTGT 3.9 0.0039 P0.5 retina CCTGACTGAG (6) 3.9 0.0039 P0.5 retina CTGGGCTCCT (9) 2 0.002 P0.5 retina TGAGCGATGT 2 0.002 P2.5 retina ATCAGTGGCT (2) 19.4 0.0194 P2.5 retina GAAAGGGCTG (4) 8.8 0.0088 P2.5 retina CTGGGCTCCT (9) 1.8 0.0018 P2.5 retina TGAGCGATGT 1.8 0.0018 P4.5 retina ATCAGTGGCT (2) 7.9 0.0079 P4.5 retina GAAAGGGCTG (4) 4 0.004 P4.5 retina AGGCCGCTGG (3) 2 0.002 P4.5 retina ATCAAGGGGG (6) 2 0.002 P4.5 retina TGAGCGATGT 2 0.002 P6.5 retina ATCAGTGGCT (2) 15 0.015 P6.5 retina GAAAGGGCTG (4) 6.7 0.0067 P6.5 retina ATCAAGGGGG (6) 1.7 0.0017 P10.5 crx- retina ATCAGTGGCT (2) 35.3 0.0353 P10.5 crx- retina CCTGACTGAG (6) 11.1 0.0111 P10.5 crx- retina GAAAGGGCTG (4) 11.1 0.0111 P10.5 crx- retina CTTGGTGTAG (2) 1.9 0.0019 P10.5 crx+ retina ATCAGTGGCT (2) 25 0.025 P10.5 crx+ retina CCTGACTGAG (6) 5.8 0.0058 P10.5 crx+ retina GAAAGGGCTG (4) 5.8 0.0058 P10.5 crx+ retina AGAGTGCTGT 1.9 0.0019 P10.5 crx+ retina TGAGCGATGT 1.9 0.0019 Adult retinal GAAAGGGCTG (4) 14.8 0.0148 Adult retinal ATCAGTGGCT (2) 5.6 0.0056 Adult retinal AGGCCGCTGG (3) 1.9 0.0019 Adult retinal CTGGGCTCCT (9) 1.9 0.0019 Adult retinal TGAGCGATGT 1.9 0.0019 ONL ATCAGTGGCT (2) 13.4 0.0134 ONL GAAAGGGCTG (4) 11.5 0.0115 ONL CCTGACTGAG (6) 5.7 0.0057