Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.3705	P4ha2	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	11	11 29.2 cM	18452
Gene Ontology	endoplasmic reticulum | extracellular space | oxidoreductase activity | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | peptidyl-proline hydroxylation to 4-hydroxy-L-proline | procollagen-proline 4-dioxygenase activity | procollagen-proline 4-dioxygenase activity | protein binding | protein metabolism
Human Homolog	P4HA2[procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide II]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 31 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CTGAGTGTGG (2) CTGGGGAAGA (2) 3.2 0.0032 P8 GC+1d culture CTGAGTGTGG (2) 3.4 0.0034 P8 GC+SHH+1d culture CTGAGTGTGG (2) 2.3 0.0023 3T3 fibroblasts TGTGTTTTTA (2) 3.5 0.0035 Hypothalamus CTGAGTGTGG (2) GAGCAGTTTT TGTGTTTTTA (2) 9 0.009 E12.5 retina GAGCAGTTTT TGTGTTTTTA (2) 3.8 0.0038 E14.5 retina CTGAGTGTGG (2) TGTGTTTTTA (2) 3.6 0.0036 E16.5 retina GAGCAGTTTT TGTGTTTTTA (2) 7.2 0.0072 E18.5 retina CTGAGTGTGG (2) 1.8 0.0018 P0.5 retina CTGAGTGTGG (2) CTGGGGAAGA (2) 5.9 0.0059 P4.5 retina CTGAGTGTGG (2) TGTGTTTTTA (2) 9.9 0.0099 P6.5 retina CTGAGTGTGG (2) TGTGTTTTTA (2) 5 0.005 P10.5 crx- retina CTGAGTGTGG (2) GAGCAGTTTT TGTGTTTTTA (2) 9.3 0.0093 P10.5 crx+ retina CTGAGTGTGG (2) GAGCAGTTTT 5.7 0.0057 Adult retinal CTGAGTGTGG (2) CTGGGGAAGA (2) TGTGTTTTTA (2) 14.9 0.0149 ONL CTGAGTGTGG (2) TGTGTTTTTA (2) 3.8 0.0038