Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.37371	Plod1	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	4	4 76.5 cM	18822
Gene Ontology	endoplasmic reticulum | extracellular space | membrane | oxidoreductase activity | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | procollagen-lysine 5-dioxygenase activity | protein metabolism
Human Homolog	PLOD[procollagen-lysine, 2-oxoglutarate 5-dioxygenase (lysine hydroxylase, Ehlers-Danlos syndrome type VI)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 60 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GAATAAAGAG (6) 17.9 0.0179 P8 Cb GC GCTTCTTCTG (7) 13.1 0.0131 P8 Cb GC CCCCTCCCCA (6) 3.3 0.0033 P8 Cb GC GTGCTCCCAC (3) 1.6 0.0016 P8 Cb GC TTCCTGACAC (3) 1.6 0.0016 Cb medulloblastoma GCTTCTTCTG (7) 23.1 0.0231 Cb medulloblastoma CCCCTCCCCA (6) 16.2 0.0162 Cb medulloblastoma GAATAAAGAG (6) 2.3 0.0023 Cb medulloblastoma TTCCTGACAC (3) 2.3 0.0023 P8 GC+1d culture GCTTCTTCTG (7) 11.4 0.0114 P8 GC+1d culture CCCCTCCCCA (6) 5.7 0.0057 P8 GC+1d culture GAATAAAGAG (6) 4.6 0.0046 P8 GC+1d culture GGCAGCCCCA (4) 1.1 0.0011 P8 GC+1d culture TTCCTGACAC (3) 1.1 0.0011 P8 GC+SHH+1d culture GAATAAAGAG (6) 12.9 0.0129 P8 GC+SHH+1d culture GCTTCTTCTG (7) 10.5 0.0105 P8 GC+SHH+1d culture TTCCTGACAC (3) 3.5 0.0035 P8 GC+SHH+1d culture CCCCTCCCCA (6) 1.2 0.0012 P8 GC+SHH+1d culture GTGCTCCCAC (3) 1.2 0.0012 3T3 fibroblasts GCTTCTTCTG (7) 7 0.007 3T3 fibroblasts GTGCTCCCAC (3) 7 0.007 E15 cortex GCTTCTTCTG (7) 4.9 0.0049 E15 cortex GGCAGCCCCA (4) 4.9 0.0049 P1 cortex GAATAAAGAG (6) 9.1 0.0091 P1 cortex GCTTCTTCTG (7) 4.5 0.0045 Hypothalamus GCTTCTTCTG (7) 7.2 0.0072 Hypothalamus GAATAAAGAG (6) 3.6 0.0036 E12.5 retina GAATAAAGAG (6) 24.4 0.0244 E12.5 retina GCTTCTTCTG (7) 5.6 0.0056 E14.5 retina GAATAAAGAG (6) 18.2 0.0182 E14.5 retina GCTTCTTCTG (7) 5.5 0.0055 E16.5 retina GCTTCTTCTG (7) 12.7 0.0127 E16.5 retina GAATAAAGAG (6) 10.9 0.0109 E16.5 retina TTCCTGACAC (3) 1.8 0.0018 E18.5 retina GAATAAAGAG (6) 27.3 0.0273 E18.5 retina GCTTCTTCTG (7) 10.9 0.0109 P0.5 retina GAATAAAGAG (6) 7.9 0.0079 P0.5 retina GCTTCTTCTG (7) 3.9 0.0039 P2.5 retina GAATAAAGAG (6) 21.1 0.0211 P2.5 retina GCTTCTTCTG (7) 14.1 0.0141 P4.5 retina GAATAAAGAG (6) 37.6 0.0376 P4.5 retina GCTTCTTCTG (7) 11.9 0.0119 P6.5 retina GAATAAAGAG (6) 18.3 0.0183 P6.5 retina GCTTCTTCTG (7) 16.7 0.0167 P6.5 retina CCCCTCCCCA (6) 1.7 0.0017 P6.5 retina GTGCTCCCAC (3) 1.7 0.0017 P10.5 crx- retina GCTTCTTCTG (7) 3.7 0.0037 P10.5 crx- retina CCCCTCCCCA (6) 1.9 0.0019 P10.5 crx- retina GAATAAAGAG (6) 1.9 0.0019 P10.5 crx+ retina GCTTCTTCTG (7) 13.5 0.0135 P10.5 crx+ retina CCCCTCCCCA (6) 7.7 0.0077 P10.5 crx+ retina GAATAAAGAG (6) 5.8 0.0058 P10.5 crx+ retina GGCAGCCCCA (4) 1.9 0.0019 Adult retinal GAATAAAGAG (6) 3.7 0.0037 Adult retinal GCTTCTTCTG (7) 1.9 0.0019 Adult retinal GTGCTCCCAC (3) 1.9 0.0019 Adult retinal TTCCTGACAC (3) 1.9 0.0019 ONL GCTTCTTCTG (7) 7.7 0.0077 ONL CCCCTCCCCA (6) 1.9 0.0019 ONL GAATAAAGAG (6) 1.9 0.0019