Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.38241	Irak1	interleukin-1 receptor-associated kinase 1	X	X 29.6 cM	16179
Gene Ontology	ATP binding | kinase activity | protein amino acid phosphorylation | protein binding | protein kinase activity | protein serine/threonine kinase activity | receptor activity | signal transduction | transferase activity
Human Homolog	IRAK1[interleukin-1 receptor-associated kinase 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 151 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGTTGCTGG (369) 68.5 0.0685 P8 Cb GC GTGGTTCACA (32) 14.7 0.0147 P8 Cb GC GAGGCTCACA (9) 4.9 0.0049 P8 Cb GC CCCCTGTGTA (2) 3.3 0.0033 P8 Cb GC GGGTTGCTGG (3) 3.3 0.0033 P8 Cb GC GTGTCTCACA (8) 1.6 0.0016 P8 Cb GC TCTGAATTAT 1.6 0.0016 Cb medulloblastoma TGGTTGCTGG (369) 113.3 0.1133 Cb medulloblastoma GTGGTTCACA (32) 11.6 0.0116 Cb medulloblastoma GTGTCTCACA (8) 6.9 0.0069 Cb medulloblastoma GAGGCTCACA (9) 4.6 0.0046 Cb medulloblastoma TGTTGGCAAA (2) 4.6 0.0046 Cb medulloblastoma CCCCTGTGTA (2) 2.3 0.0023 Cb medulloblastoma GCTGCCCAGC (6) 2.3 0.0023 P8 GC+1d culture TGGTTGCTGG (369) 57.1 0.0571 P8 GC+1d culture GTGGTTCACA (32) 18.3 0.0183 P8 GC+1d culture TTTGAATTAT (4) 6.8 0.0068 P8 GC+1d culture GAGGCTCACA (9) 2.3 0.0023 P8 GC+1d culture GAGTCACCAC (2) 2.3 0.0023 P8 GC+1d culture GTGTCTCACA (8) 2.3 0.0023 P8 GC+1d culture CCCCTGTGTA (2) 1.1 0.0011 P8 GC+1d culture GCTGCCCAGC (6) 1.1 0.0011 P8 GC+SHH+1d culture TGGTTGCTGG (369) 89 0.089 P8 GC+SHH+1d culture GTGGTTCACA (32) 31.6 0.0316 P8 GC+SHH+1d culture GAGGCTCACA (9) 3.5 0.0035 P8 GC+SHH+1d culture GTGTCTCACA (8) 3.5 0.0035 P8 GC+SHH+1d culture TCTGAATTAT 3.5 0.0035 P8 GC+SHH+1d culture CCCCTGTGTA (2) 2.3 0.0023 P8 GC+SHH+1d culture GAGTCACCAC (2) 1.2 0.0012 P8 GC+SHH+1d culture TGGTTGGTGG (11) 1.2 0.0012 P8 GC+SHH+1d culture TTTGAATTAT (4) 1.2 0.0012 3T3 fibroblasts TGGTTGCTGG (369) 220.8 0.2208 3T3 fibroblasts GTGGTTCACA (32) 17.5 0.0175 3T3 fibroblasts GGGTTGCTGG (3) 14 0.014 3T3 fibroblasts GTGTCTCACA (8) 3.5 0.0035 3T3 fibroblasts TGGTTGGTGG (11) 3.5 0.0035 E15 cortex TGGTTGCTGG (369) 277.1 0.2771 E15 cortex GAGGCTCACA (9) 34.6 0.0346 E15 cortex GAGTCACCAC (2) 4.9 0.0049 E15 cortex GTGGTTCACA (32) 4.9 0.0049 E15 cortex GTGTCTCACA (8) 4.9 0.0049 E15 cortex TGGTTGGTGG (11) 4.9 0.0049 P1 cortex TGGTTGCTGG (369) 86.4 0.0864 P1 cortex GTGGTTCACA (32) 27.3 0.0273 P1 cortex GAGGCTCACA (9) 13.6 0.0136 P1 cortex GTGTCTCACA (8) 13.6 0.0136 P1 cortex GGGTTGCTGG (3) 9.1 0.0091 P1 cortex CCCCTGTGTA (2) 4.5 0.0045 P1 cortex GGGTGGGGAG (9) 4.5 0.0045 P1 cortex TGGTTGGTGG (11) 4.5 0.0045 Hypothalamus TGGTTGCTGG (369) 349.6 0.3496 Hypothalamus GTGGTTCACA (32) 12.7 0.0127 Hypothalamus GAGGCTCACA (9) 7.2 0.0072 Hypothalamus GTGTCTCACA (8) 3.6 0.0036 Hypothalamus GGGTTGCTGG (3) 1.8 0.0018 Hypothalamus TGTTGGCAAA (2) 1.8 0.0018 Hypothalamus TTTGAATTAT (4) 1.8 0.0018 E12.5 retina TGGTTGCTGG (369) 157.7 0.1577 E12.5 retina GTGGTTCACA (32) 28.2 0.0282 E12.5 retina GAGGCTCACA (9) 15 0.015 E12.5 retina GCTGCCCAGC (6) 3.8 0.0038 E12.5 retina CCCCTGTGTA (2) 1.9 0.0019 E12.5 retina TCTGAATTAT 1.9 0.0019 E14.5 retina TGGTTGCTGG (369) 936.5 0.9365 E14.5 retina GTGGTTCACA (32) 51 0.051 E14.5 retina GAGGCTCACA (9) 23.7 0.0237 E14.5 retina GGGTTGCTGG (3) 9.1 0.0091 E14.5 retina GTGTCTCACA (8) 9.1 0.0091 E14.5 retina TGGTTGGTGG (11) 3.6 0.0036 E14.5 retina GCTGCCCAGC (6) 1.8 0.0018 E14.5 retina GGGTGGGGAG (9) 1.8 0.0018 E16.5 retina TGGTTGCTGG (369) 767.9 0.7679 E16.5 retina GTGGTTCACA (32) 39.8 0.0398 E16.5 retina GAGGCTCACA (9) 21.7 0.0217 E16.5 retina GTGTCTCACA (8) 7.2 0.0072 E16.5 retina GGGTTGCTGG (3) 3.6 0.0036 E16.5 retina CCCCTGTGTA (2) 1.8 0.0018 E16.5 retina GAGTCACCAC (2) 1.8 0.0018 E16.5 retina TGGTTGGTGG (11) 1.8 0.0018 E18.5 retina TGGTTGCTGG (369) 252.8 0.2528 E18.5 retina GTGGTTCACA (32) 40 0.04 E18.5 retina GAGGCTCACA (9) 10.9 0.0109 E18.5 retina GTGTCTCACA (8) 7.3 0.0073 E18.5 retina GGGTTGCTGG (3) 1.8 0.0018 P0.5 retina TGGTTGCTGG (369) 190.4 0.1904 P0.5 retina GTGGTTCACA (32) 35.3 0.0353 P0.5 retina GAGGCTCACA (9) 11.8 0.0118 P0.5 retina GTGTCTCACA (8) 5.9 0.0059 P0.5 retina CCCCTGTGTA (2) 2 0.002 P0.5 retina GGGTTGCTGG (3) 2 0.002 P0.5 retina TCTGAATTAT 2 0.002 P0.5 retina TGGTTGGTGG (11) 2 0.002 P2.5 retina TGGTTGCTGG (369) 165.4 0.1654 P2.5 retina GTGGTTCACA (32) 12.3 0.0123 P2.5 retina GAGGCTCACA (9) 7 0.007 P2.5 retina CCCCTGTGTA (2) 3.5 0.0035 P2.5 retina GGGTTGCTGG (3) 3.5 0.0035 P2.5 retina GTGTCTCACA (8) 3.5 0.0035 P2.5 retina TTTGAATTAT (4) 3.5 0.0035 P2.5 retina GCTGCCCAGC (6) 1.8 0.0018 P2.5 retina GGGTGGGGAG (9) 1.8 0.0018 P2.5 retina TGTTGGCAAA (2) 1.8 0.0018 P4.5 retina TGGTTGCTGG (369) 150.6 0.1506 P4.5 retina GTGGTTCACA (32) 33.7 0.0337 P4.5 retina GAGGCTCACA (9) 9.9 0.0099 P4.5 retina TGGTTGGTGG (11) 5.9 0.0059 P4.5 retina GGGTTGCTGG (3) 2 0.002 P4.5 retina GTGTCTCACA (8) 2 0.002 P4.5 retina TCTGAATTAT 2 0.002 P6.5 retina TGGTTGCTGG (369) 156.7 0.1567 P6.5 retina GTGGTTCACA (32) 25 0.025 P6.5 retina GAGGCTCACA (9) 10 0.01 P6.5 retina GTGTCTCACA (8) 6.7 0.0067 P6.5 retina CCCCTGTGTA (2) 5 0.005 P6.5 retina TGGTTGGTGG (11) 5 0.005 P6.5 retina GGGTTGCTGG (3) 3.3 0.0033 P6.5 retina TTTGAATTAT (4) 3.3 0.0033 P10.5 crx- retina TGGTTGCTGG (369) 280.5 0.2805 P10.5 crx- retina GTGGTTCACA (32) 20.4 0.0204 P10.5 crx- retina GAGGCTCACA (9) 13 0.013 P10.5 crx- retina CCCCTGTGTA (2) 5.6 0.0056 P10.5 crx- retina GAGTCACCAC (2) 1.9 0.0019 P10.5 crx- retina GGGTTGCTGG (3) 1.9 0.0019 P10.5 crx- retina GTGTCTCACA (8) 1.9 0.0019 P10.5 crx- retina TCTGAATTAT 1.9 0.0019 P10.5 crx- retina TTTGAATTAT (4) 1.9 0.0019 P10.5 crx+ retina TGGTTGCTGG (369) 101.9 0.1019 P10.5 crx+ retina GTGGTTCACA (32) 32.7 0.0327 P10.5 crx+ retina GAGGCTCACA (9) 5.8 0.0058 P10.5 crx+ retina GTGTCTCACA (8) 5.8 0.0058 P10.5 crx+ retina CCCCTGTGTA (2) 3.8 0.0038 P10.5 crx+ retina GCTGCCCAGC (6) 3.8 0.0038 P10.5 crx+ retina GGGTTGCTGG (3) 1.9 0.0019 Adult retinal TGGTTGCTGG (369) 214.8 0.2148 Adult retinal GTGGTTCACA (32) 33.3 0.0333 Adult retinal CCCCTGTGTA (2) 7.4 0.0074 Adult retinal GAGGCTCACA (9) 7.4 0.0074 Adult retinal GGGTTGCTGG (3) 3.7 0.0037 Adult retinal GTGTCTCACA (8) 3.7 0.0037 Adult retinal GAGTCACCAC (2) 1.9 0.0019 Adult retinal TCTGAATTAT 1.9 0.0019 Adult retinal TGGTTGGTGG (11) 1.9 0.0019 Adult retinal TTTGAATTAT (4) 1.9 0.0019 ONL TGGTTGCTGG (369) 398.4 0.3984 ONL GTGGTTCACA (32) 32.6 0.0326 ONL GTGTCTCACA (8) 9.6 0.0096 ONL GAGGCTCACA (9) 7.7 0.0077 ONL GGGTTGCTGG (3) 5.7 0.0057 ONL TGGTTGGTGG (11) 3.8 0.0038 ONL TGTTGGCAAA (2) 1.9 0.0019 ONL TTTGAATTAT (4) 1.9 0.0019