Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.38433
Wars
tryptophanyl-tRNA synthetase
12
22375
Mm.38433
5033424D13Rik
RIKEN cDNA 5033424D13 gene
12
75975
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 88 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
GGCAGCACAA (
3
)
48.9
0.0489
P8 Cb GC
CAGTCTCTCA (
5
)
32.6
0.0326
P8 Cb GC
CATTTTCTGG (
5
)
19.6
0.0196
P8 Cb GC
GAATGAGCCT
(
8
)
1.6
0.0016
P8 Cb GC
TATGTGTGTG (
19
)
1.6
0.0016
Cb medulloblastoma
CAGTCTCTCA (
5
)
20.8
0.0208
Cb medulloblastoma
GGCAGCACAA (
3
)
20.8
0.0208
Cb medulloblastoma
CATTTTCTGG (
5
)
11.6
0.0116
Cb medulloblastoma
GAATGAGCCT
(
8
)
4.6
0.0046
P8 GC+1d culture
CAGTCTCTCA (
5
)
38.8
0.0388
P8 GC+1d culture
CATTTTCTGG (
5
)
13.7
0.0137
P8 GC+1d culture
GGCAGCACAA (
3
)
13.7
0.0137
P8 GC+1d culture
GAATGAGCCT
(
8
)
5.7
0.0057
P8 GC+1d culture
TATGTGTGTG (
19
)
5.7
0.0057
P8 GC+1d culture
TGTGTATCCT (
6
)
1.1
0.0011
P8 GC+SHH+1d culture
CAGTCTCTCA (
5
)
31.6
0.0316
P8 GC+SHH+1d culture
GGCAGCACAA (
3
)
24.6
0.0246
P8 GC+SHH+1d culture
TATGTGTGTG (
19
)
8.2
0.0082
P8 GC+SHH+1d culture
CATTTTCTGG (
5
)
7
0.007
P8 GC+SHH+1d culture
GAATGAGCCT
(
8
)
4.7
0.0047
P8 GC+SHH+1d culture
TGTGTATCCT (
6
)
2.3
0.0023
3T3 fibroblasts
CAGTCTCTCA (
5
)
168.2
0.1682
3T3 fibroblasts
GGCAGCACAA (
3
)
38.6
0.0386
3T3 fibroblasts
TATGTGTGTG (
19
)
3.5
0.0035
E15 cortex
CAGTCTCTCA (
5
)
29.7
0.0297
E15 cortex
GGCAGCACAA (
3
)
29.7
0.0297
P1 cortex
GGCAGCACAA (
3
)
100
0.1
P1 cortex
CAGTCTCTCA (
5
)
45.5
0.0455
P1 cortex
TATGTGTGTG (
19
)
9.1
0.0091
P1 cortex
TGTGTATCCT (
6
)
4.5
0.0045
Hypothalamus
GGCAGCACAA (
3
)
10.9
0.0109
Hypothalamus
CAGTCTCTCA (
5
)
7.2
0.0072
Hypothalamus
CATTTTCTGG (
5
)
3.6
0.0036
Hypothalamus
GAATGAGCCT
(
8
)
1.8
0.0018
E12.5 retina
CAGTCTCTCA (
5
)
46.9
0.0469
E12.5 retina
GGCAGCACAA (
3
)
22.5
0.0225
E12.5 retina
CATTTTCTGG (
5
)
9.4
0.0094
E12.5 retina
GAATGAGCCT
(
8
)
1.9
0.0019
E12.5 retina
TATGTGTGTG (
19
)
1.9
0.0019
E14.5 retina
GGCAGCACAA (
3
)
12.8
0.0128
E14.5 retina
CAGTCTCTCA (
5
)
5.5
0.0055
E14.5 retina
CATTTTCTGG (
5
)
1.8
0.0018
E14.5 retina
GAATGAGCCT
(
8
)
1.8
0.0018
E16.5 retina
GGCAGCACAA (
3
)
12.7
0.0127
E16.5 retina
CAGTCTCTCA (
5
)
5.4
0.0054
E16.5 retina
GAATGAGCCT
(
8
)
3.6
0.0036
E16.5 retina
CATTTTCTGG (
5
)
1.8
0.0018
E18.5 retina
GGCAGCACAA (
3
)
50.9
0.0509
E18.5 retina
CAGTCTCTCA (
5
)
16.4
0.0164
E18.5 retina
GAATGAGCCT
(
8
)
5.5
0.0055
P0.5 retina
CAGTCTCTCA (
5
)
102.1
0.1021
P0.5 retina
GGCAGCACAA (
3
)
19.6
0.0196
P0.5 retina
GAATGAGCCT
(
8
)
5.9
0.0059
P0.5 retina
CATTTTCTGG (
5
)
3.9
0.0039
P0.5 retina
TATGTGTGTG (
19
)
3.9
0.0039
P2.5 retina
CAGTCTCTCA (
5
)
24.6
0.0246
P2.5 retina
GGCAGCACAA (
3
)
24.6
0.0246
P2.5 retina
CATTTTCTGG (
5
)
12.3
0.0123
P2.5 retina
GGCCTGGGGG (
7
)
1.8
0.0018
P2.5 retina
TATGTGTGTG (
19
)
1.8
0.0018
P4.5 retina
GGCAGCACAA (
3
)
31.7
0.0317
P4.5 retina
CAGTCTCTCA (
5
)
9.9
0.0099
P4.5 retina
CATTTTCTGG (
5
)
5.9
0.0059
P4.5 retina
GAATGAGCCT
(
8
)
4
0.004
P4.5 retina
TGTGTATCCT (
6
)
2
0.002
P6.5 retina
GGCAGCACAA (
3
)
26.7
0.0267
P6.5 retina
CAGTCTCTCA (
5
)
15
0.015
P6.5 retina
CATTTTCTGG (
5
)
6.7
0.0067
P6.5 retina
GGCCTGGGGG (
7
)
1.7
0.0017
P10.5 crx- retina
CAGTCTCTCA (
5
)
46.4
0.0464
P10.5 crx- retina
GGCAGCACAA (
3
)
26
0.026
P10.5 crx- retina
GAATGAGCCT
(
8
)
9.3
0.0093
P10.5 crx- retina
TGTGTATCCT (
6
)
5.6
0.0056
P10.5 crx- retina
CATTTTCTGG (
5
)
3.7
0.0037
P10.5 crx- retina
TATGTGTGTG (
19
)
1.9
0.0019
P10.5 crx+ retina
GGCAGCACAA (
3
)
25
0.025
P10.5 crx+ retina
CAGTCTCTCA (
5
)
19.2
0.0192
P10.5 crx+ retina
CATTTTCTGG (
5
)
5.8
0.0058
P10.5 crx+ retina
GAATGAGCCT
(
8
)
1.9
0.0019
P10.5 crx+ retina
TATGTGTGTG (
19
)
1.9
0.0019
Adult retinal
CAGTCTCTCA (
5
)
18.5
0.0185
Adult retinal
GGCAGCACAA (
3
)
11.1
0.0111
Adult retinal
GAATGAGCCT
(
8
)
1.9
0.0019
Adult retinal
GGCCTGGGGG (
7
)
1.9
0.0019
Adult retinal
TATGTGTGTG (
19
)
1.9
0.0019
ONL
CAGTCTCTCA (
5
)
24.9
0.0249
ONL
GGCAGCACAA (
3
)
24.9
0.0249
ONL
GAATGAGCCT
(
8
)
3.8
0.0038
