Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.3879	Hif1a	hypoxia inducible factor 1, alpha subunit	12	12 C3 (12 31.0 cM)	15251
Gene Ontology	angiogenesis | cell differentiation | DNA binding | flagellum (sensu Eukarya) | nucleus | protein binding | regulation of transcription, DNA-dependent | response to hypoxia | response to hypoxia | signal transducer activity | signal transduction | transcription factor activity
Human Homolog	HIF1A[hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 6 In Situ Hybridization Images

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SAGE Tags

Total 64 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AATTTTTGTT (2) 4.9 0.0049 Cb medulloblastoma TTAAATAATG 2.3 0.0023 P8 GC+1d culture AATTTTTGTT (2) TTAAATAATG 6.8 0.0068 P8 GC+SHH+1d culture AATTTTTGTT (2) CAATATATTC GCACATTAAT TTAAATAATG 9.5 0.0095 3T3 fibroblasts CAGACTGCTG GTGGTGTGGT (2) 7 0.007 E15 cortex AATTTTTGTT (2) ATTTTTAGTT 14.8 0.0148 P1 cortex AATTTTTGTT (2) CTTTGTTAGT 13.6 0.0136 Hypothalamus AATTTTTGTT (2) ACATTTAGGG 5.4 0.0054 E12.5 retina AATTTTTGTT (2) CAGACTGCTG CTTTGTTAGT 11.3 0.0113 E14.5 retina AATTTTTGTT (2) ATTTTTAGTT CTTTGTTAGT GCACATTAAT 18.1 0.0181 E16.5 retina AATTTTTGTT (2) ACATTTAGGG CTTTGTTAGT GCACATTAAT 7.2 0.0072 E18.5 retina CTTTGTTAGT GCACATTAAT TTAAATAATG 10.9 0.0109 P0.5 retina AATTTTTGTT (2) ACATTTAGGG CAATATATTC CAGACTGCTG CTTTGTTAGT GCACATTAAT 19.8 0.0198 P2.5 retina CTTTGTTAGT TTAAATAATG 7.1 0.0071 P4.5 retina AATTTTTGTT (2) CTTTGTTAGT TTAAATAATG 9.9 0.0099 P6.5 retina AATTTTTGTT (2) CAGACTGCTG CTTTGTTAGT GCACATTAAT GTGGTGTGGT (2) 16.6 0.0166 P10.5 crx- retina AATTTTTGTT (2) CAGACTGCTG CTTTGTTAGT GCACATTAAT TTAAATAATG 22.3 0.0223 P10.5 crx+ retina AATTTTTGTT (2) CAATATATTC CAGACTGCTG CTTTGTTAGT TTAAATAATG 26.9 0.0269 Adult retinal AATTTTTGTT (2) CAGACTGCTG CTTTGTTAGT GCACATTAAT 13.1 0.0131 ONL ATTTTTAGTT CAGACTGCTG CTTTGTTAGT GTGGTGTGGT (2) 28.7 0.0287