| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AGCCTCAAGG (2) GGCCAGCCTT (3) GGGGCTTTGC
| 9.8 | 0.0098 |
| Cb medulloblastoma | GGCCAGCCTT (3)
| 2.3 | 0.0023 |
| P8 GC+1d culture | AGCCTCAAGG (2) GGGGCTTTGC
| 5.7 | 0.0057 |
| P8 GC+SHH+1d culture | AGCCTCAAGG (2) GGCCAGCCTT (3) GGGGCTTTGC
| 9.3 | 0.0093 |
| 3T3 fibroblasts | AGCCTCAAGG (2) GGCCAGCCTT (3) GGGGCTTTGC
| 14 | 0.014 |
| E15 cortex | GGCAGCAGAG
| 4.9 | 0.0049 |
| P1 cortex | GGCCAGCCTT (3) GGGGCTTTGC
| 9 | 0.009 |
| Hypothalamus | AGCCTCAAGG (2) GGCAGCAGAG GGCCAGCCTT (3) GGGGCTTTGC TACCACGCAC (2)
| 12.6 | 0.0126 |
| E12.5 retina | AGCCTCAAGG (2)
| 5.6 | 0.0056 |
| E14.5 retina | AGCCTCAAGG (2) GGGGCTTTGC
| 5.4 | 0.0054 |
| E16.5 retina | AGCCTCAAGG (2) GACTTGGCCA (2) GGCCAGCCTT (3) TACCACGCAC (2)
| 16.3 | 0.0163 |
| E18.5 retina | AGCCTCAAGG (2)
| 3.6 | 0.0036 |
| P0.5 retina | AGCCTCAAGG (2) GGCCAGCCTT (3) GGGGCTTTGC
| 11.8 | 0.0118 |
| P2.5 retina | AGCCTCAAGG (2) GGCAGCAGAG GGCCAGCCTT (3)
| 8.9 | 0.0089 |
| P4.5 retina | AGCCTCAAGG (2) GGCCAGCCTT (3)
| 9.9 | 0.0099 |
| P6.5 retina | AGCCTCAAGG (2) GGCCAGCCTT (3)
| 8.4 | 0.0084 |
| P10.5 crx- retina | AGCCTCAAGG (2) GACTTGGCCA (2) GGCCAGCCTT (3)
| 9.4 | 0.0094 |
| P10.5 crx+ retina | AGCCTCAAGG (2) GACTTGGCCA (2) GGCCAGCCTT (3) GGGGCTTTGC
| 21.1 | 0.0211 |
| Adult retinal | AGCCTCAAGG (2) GGGGCTTTGC
| 3.8 | 0.0038 |
| ONL | AGCCTCAAGG (2) GGCAGCAGAG
| 3.8 | 0.0038 |