Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.3960	Irf3	interferon regulatory factor 3	7	7 B2	54131
Gene Ontology	DNA binding | nucleus | protein homodimerization activity | regulation of transcription, DNA-dependent | transcription factor activity
Human Homolog	IRF3[interferon regulatory factor 3]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 45 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC GACTTCCAGG (5) 4.9 0.0049 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma GACTTCCAGG (5) 4.6 0.0046 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture GACTTCCAGG (5) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture GACTTCCAGG (5) 2.3 0.0023 P8 GC+SHH+1d culture GGTCAAAAAA (7) 1.2 0.0012 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex GACTTCCAGG (5) 14.8 0.0148 E15 cortex GGTCAAAAAA (7) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex TGAACAACTT (2) 13.6 0.0136 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus GACTTCCAGG (5) 1.8 0.0018 Hypothalamus TGAACAACTT (2) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina GACTTCCAGG (5) 5.5 0.0055 E14.5 retina GGTCAAAAAA (7) 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina GACTTCCAGG (5) 10.9 0.0109 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina GACTTCCAGG (5) 7.3 0.0073 E18.5 retina GGTCAAAAAA (7) 1.8 0.0018 E18.5 retina TGAACAACTT (2) 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina GACTTCCAGG (5) 5.9 0.0059 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina GACTTCCAGG (5) 15.8 0.0158 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina GACTTCCAGG (5) 13.9 0.0139 P4.5 retina GGTCAAAAAA (7) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina GACTTCCAGG (5) 10 0.01 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina GACTTCCAGG (5) 27.9 0.0279 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina GACTTCCAGG (5) 7.7 0.0077 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal GACTTCCAGG (5) 13 0.013 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL GACTTCCAGG (5) 5.7 0.0057