Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.41180
6330559I19Rik
RIKEN cDNA 6330559I19 gene
5
76185
Mm.41180
2900002H16Rik
RIKEN cDNA 2900002H16 gene
5
75695
Human Homolog
FLJ39378[hypothetical protein FLJ39378]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 61 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CCTTTAATCC (
355
)
52.2
0.0522
P8 Cb GC
AAGTTGCCCT
(
3
)
1.6
0.0016
Cb medulloblastoma
CCTTTAATCC (
355
)
41.6
0.0416
P8 GC+1d culture
CCTTTAATCC (
355
)
32
0.032
P8 GC+1d culture
CAGTTCTAGC
(
2
)
2.3
0.0023
P8 GC+1d culture
TGCCACATTT
(
2
)
2.3
0.0023
P8 GC+1d culture
AAGTTGCCCT
(
3
)
1.1
0.0011
P8 GC+1d culture
CATACACAAA (
6
)
1.1
0.0011
P8 GC+SHH+1d culture
CCTTTAATCC (
355
)
25.8
0.0258
P8 GC+SHH+1d culture
CAGTTCTAGC
(
2
)
2.3
0.0023
P8 GC+SHH+1d culture
GGGGCAAGCC (
5
)
2.3
0.0023
3T3 fibroblasts
CCTTTAATCC (
355
)
70.1
0.0701
E15 cortex
CCTTTAATCC (
355
)
54.4
0.0544
E15 cortex
GGGGCAAGCC (
5
)
4.9
0.0049
P1 cortex
CCTTTAATCC (
355
)
154.5
0.1545
P1 cortex
CATACACAAA (
6
)
4.5
0.0045
Hypothalamus
CCTTTAATCC (
355
)
19.9
0.0199
Hypothalamus
CATACACAAA (
6
)
3.6
0.0036
Hypothalamus
ATTTTCTGTT
(
4
)
1.8
0.0018
E12.5 retina
CCTTTAATCC (
355
)
75.1
0.0751
E12.5 retina
CATACACAAA (
6
)
5.6
0.0056
E14.5 retina
CCTTTAATCC (
355
)
120.3
0.1203
E14.5 retina
ATTTTCTGTT
(
4
)
1.8
0.0018
E14.5 retina
GATGTGTACG (
4
)
1.8
0.0018
E16.5 retina
CCTTTAATCC (
355
)
68.8
0.0688
E16.5 retina
CAGTTCTAGC
(
2
)
1.8
0.0018
E16.5 retina
GATGTGTACG (
4
)
1.8
0.0018
E18.5 retina
CCTTTAATCC (
355
)
23.6
0.0236
E18.5 retina
CAGTTCTAGC
(
2
)
1.8
0.0018
E18.5 retina
CATACACAAA (
6
)
1.8
0.0018
P0.5 retina
CCTTTAATCC (
355
)
72.6
0.0726
P0.5 retina
CAGTTCTAGC
(
2
)
2
0.002
P0.5 retina
GATGTGTACG (
4
)
2
0.002
P0.5 retina
GGGGCAAGCC (
5
)
2
0.002
P2.5 retina
CCTTTAATCC (
355
)
70.4
0.0704
P2.5 retina
GATGTGTACG (
4
)
3.5
0.0035
P2.5 retina
CATACACAAA (
6
)
1.8
0.0018
P2.5 retina
TGCCACATTT
(
2
)
1.8
0.0018
P4.5 retina
CCTTTAATCC (
355
)
43.6
0.0436
P4.5 retina
GATGTGTACG (
4
)
15.9
0.0159
P6.5 retina
CCTTTAATCC (
355
)
70
0.07
P6.5 retina
GATGTGTACG (
4
)
20
0.02
P6.5 retina
CAGTTCTAGC
(
2
)
1.7
0.0017
P6.5 retina
CATACACAAA (
6
)
1.7
0.0017
P10.5 crx- retina
CCTTTAATCC (
355
)
63.2
0.0632
P10.5 crx- retina
GATGTGTACG (
4
)
14.9
0.0149
P10.5 crx- retina
GGGGCAAGCC (
5
)
3.7
0.0037
P10.5 crx- retina
CAGTTCTAGC
(
2
)
1.9
0.0019
P10.5 crx+ retina
CCTTTAATCC (
355
)
38.4
0.0384
P10.5 crx+ retina
GATGTGTACG (
4
)
38.4
0.0384
P10.5 crx+ retina
CATACACAAA (
6
)
3.8
0.0038
P10.5 crx+ retina
AAGTTGCCCT
(
3
)
1.9
0.0019
P10.5 crx+ retina
CAGTTCTAGC
(
2
)
1.9
0.0019
P10.5 crx+ retina
TGCCACATTT
(
2
)
1.9
0.0019
Adult retinal
CCTTTAATCC (
355
)
129.6
0.1296
Adult retinal
GATGTGTACG (
4
)
27.8
0.0278
Adult retinal
ATTTTCTGTT
(
4
)
1.9
0.0019
Adult retinal
GGGGCAAGCC (
5
)
1.9
0.0019
ONL
CCTTTAATCC (
355
)
84.3
0.0843
ONL
GATGTGTACG (
4
)
34.5
0.0345
ONL
CATACACAAA (
6
)
1.9
0.0019
