Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.41271
Stard7
START domain containing 7
2
2 F1 (2 62.5 cM)
99138
Human Homolog
STARD7[START domain containing 7]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
Total 21 In Situ Hybridization Images
Images -- Click to Enlarge
SAGE Tags
Total 104 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CCTTACACTT (
5
)
16.3
0.0163
P8 Cb GC
TATGTGTGCG
14.7
0.0147
P8 Cb GC
GTGGCGCACG (
61
)
13.1
0.0131
P8 Cb GC
CCTCTGTTTG (
3
)
8.2
0.0082
P8 Cb GC
CTTACACTTG
(
5
)
8.2
0.0082
P8 Cb GC
TTTGATAGAT (
3
)
1.6
0.0016
Cb medulloblastoma
CCTTACACTT (
5
)
16.2
0.0162
Cb medulloblastoma
TATGTGTGCG
13.9
0.0139
Cb medulloblastoma
CCTCTGTTTG (
3
)
11.6
0.0116
Cb medulloblastoma
GTGGCGCACG (
61
)
6.9
0.0069
Cb medulloblastoma
CTTACACTTG
(
5
)
2.3
0.0023
P8 GC+1d culture
CCTTACACTT (
5
)
26.3
0.0263
P8 GC+1d culture
CCTCTGTTTG (
3
)
9.1
0.0091
P8 GC+1d culture
GTGGCGCACG (
61
)
6.8
0.0068
P8 GC+1d culture
TATGTGTGCG
6.8
0.0068
P8 GC+1d culture
CTTACACTTG
(
5
)
3.4
0.0034
P8 GC+1d culture
GCCTCTGCCG
1.1
0.0011
P8 GC+SHH+1d culture
CCTTACACTT (
5
)
24.6
0.0246
P8 GC+SHH+1d culture
CCTCTGTTTG (
3
)
8.2
0.0082
P8 GC+SHH+1d culture
TATGTGTGCG
8.2
0.0082
P8 GC+SHH+1d culture
CTTACACTTG
(
5
)
3.5
0.0035
P8 GC+SHH+1d culture
GTGGCGCACG (
61
)
2.3
0.0023
3T3 fibroblasts
GTGGCGCACG (
61
)
63.1
0.0631
3T3 fibroblasts
CCTCTGTTTG (
3
)
7
0.007
3T3 fibroblasts
TATGTGTGCG
3.5
0.0035
E15 cortex
GTGGCGCACG (
61
)
113.8
0.1138
E15 cortex
CCTCTGTTTG (
3
)
14.8
0.0148
E15 cortex
CCTTACACTT (
5
)
14.8
0.0148
E15 cortex
TAGGCCGAAG (
3
)
4.9
0.0049
P1 cortex
CCTCTGTTTG (
3
)
27.3
0.0273
P1 cortex
CCTTACACTT (
5
)
27.3
0.0273
P1 cortex
GTGGCGCACG (
61
)
18.2
0.0182
P1 cortex
TATGTGTGCG
9.1
0.0091
Hypothalamus
CCTTACACTT (
5
)
27.2
0.0272
Hypothalamus
CCTCTGTTTG (
3
)
9.1
0.0091
Hypothalamus
TATGTGTGCG
9.1
0.0091
Hypothalamus
GTGGCGCACG (
61
)
3.6
0.0036
Hypothalamus
CTTACACTTG
(
5
)
1.8
0.0018
E12.5 retina
CCTTACACTT (
5
)
13.1
0.0131
E12.5 retina
GTGGCGCACG (
61
)
11.3
0.0113
E12.5 retina
CCTCTGTTTG (
3
)
9.4
0.0094
E12.5 retina
CTTACACTTG
(
5
)
9.4
0.0094
E12.5 retina
GCCTCTGCCG
1.9
0.0019
E12.5 retina
TTTGATAGAT (
3
)
1.9
0.0019
E14.5 retina
GTGGCGCACG (
61
)
29.2
0.0292
E14.5 retina
CCTTACACTT (
5
)
21.9
0.0219
E14.5 retina
CCTCTGTTTG (
3
)
12.8
0.0128
E14.5 retina
CTTACACTTG
(
5
)
3.6
0.0036
E14.5 retina
GCCTCTGCCG
1.8
0.0018
E14.5 retina
TTTGATAGAT (
3
)
1.8
0.0018
E16.5 retina
GTGGCGCACG (
61
)
25.4
0.0254
E16.5 retina
CCTTACACTT (
5
)
19.9
0.0199
E16.5 retina
CCTCTGTTTG (
3
)
9.1
0.0091
E16.5 retina
TATGTGTGCG
5.4
0.0054
E16.5 retina
CTTACACTTG
(
5
)
3.6
0.0036
E16.5 retina
TTTGATAGAT (
3
)
3.6
0.0036
E18.5 retina
CCTTACACTT (
5
)
18.2
0.0182
E18.5 retina
CCTCTGTTTG (
3
)
10.9
0.0109
E18.5 retina
GTGGCGCACG (
61
)
10.9
0.0109
E18.5 retina
CTTACACTTG
(
5
)
5.5
0.0055
P0.5 retina
GTGGCGCACG (
61
)
25.5
0.0255
P0.5 retina
CCTTACACTT (
5
)
21.6
0.0216
P0.5 retina
CCTCTGTTTG (
3
)
13.7
0.0137
P0.5 retina
TATGTGTGCG
9.8
0.0098
P0.5 retina
CTTACACTTG
(
5
)
2
0.002
P2.5 retina
CCTTACACTT (
5
)
31.7
0.0317
P2.5 retina
GTGGCGCACG (
61
)
17.6
0.0176
P2.5 retina
CCTCTGTTTG (
3
)
12.3
0.0123
P2.5 retina
CTTACACTTG
(
5
)
7
0.007
P2.5 retina
TATGTGTGCG
1.8
0.0018
P2.5 retina
TTTGATAGAT (
3
)
1.8
0.0018
P4.5 retina
CCTCTGTTTG (
3
)
29.7
0.0297
P4.5 retina
CCTTACACTT (
5
)
19.8
0.0198
P4.5 retina
GTGGCGCACG (
61
)
17.8
0.0178
P4.5 retina
TATGTGTGCG
5.9
0.0059
P6.5 retina
GTGGCGCACG (
61
)
38.3
0.0383
P6.5 retina
CCTTACACTT (
5
)
33.3
0.0333
P6.5 retina
CCTCTGTTTG (
3
)
26.7
0.0267
P6.5 retina
TATGTGTGCG
5
0.005
P10.5 crx- retina
CCTCTGTTTG (
3
)
31.6
0.0316
P10.5 crx- retina
CCTTACACTT (
5
)
20.4
0.0204
P10.5 crx- retina
GTGGCGCACG (
61
)
13
0.013
P10.5 crx- retina
CTTACACTTG
(
5
)
1.9
0.0019
P10.5 crx- retina
TATGTGTGCG
1.9
0.0019
P10.5 crx+ retina
GTGGCGCACG (
61
)
32.7
0.0327
P10.5 crx+ retina
CCTTACACTT (
5
)
23.1
0.0231
P10.5 crx+ retina
CCTCTGTTTG (
3
)
21.1
0.0211
P10.5 crx+ retina
TATGTGTGCG
9.6
0.0096
P10.5 crx+ retina
TAGGCCGAAG (
3
)
1.9
0.0019
Adult retinal
CCTCTGTTTG (
3
)
25.9
0.0259
Adult retinal
GTGGCGCACG (
61
)
22.2
0.0222
Adult retinal
CCTTACACTT (
5
)
14.8
0.0148
Adult retinal
TATGTGTGCG
13
0.013
Adult retinal
GAGGAGTGAG (
3
)
5.6
0.0056
Adult retinal
CTTACACTTG
(
5
)
3.7
0.0037
Adult retinal
GCCTCTGCCG
1.9
0.0019
ONL
GTGGCGCACG (
61
)
23
0.023
ONL
TATGTGTGCG
19.2
0.0192
ONL
CCTCTGTTTG (
3
)
9.6
0.0096
ONL
CCTTACACTT (
5
)
3.8
0.0038
ONL
GAGGAGTGAG (
3
)
3.8
0.0038
ONL
CTTACACTTG
(
5
)
1.9
0.0019
ONL
GCCTCTGCCG
1.9
0.0019
ONL
TAGGCCGAAG (
3
)
1.9
0.0019
