Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.41367	Ddx42	DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	11		72047
Gene Ontology	ATP binding | ATP dependent helicase activity | helicase activity | hydrolase activity | nucleic acid binding
Human Homolog	DDX42[DEAD (Asp-Glu-Ala-Asp) box polypeptide 42]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 112 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TTAAAAAAAA (80) 13.1 0.0131 P8 Cb GC GGCTGTACTG (2) 9.8 0.0098 P8 Cb GC ATGTGAAATG 8.2 0.0082 P8 Cb GC TTTTTTTTTT (433) 4.9 0.0049 P8 Cb GC AAAGCACTGA (2) 1.6 0.0016 P8 Cb GC CCTTGAGTCC (2) 1.6 0.0016 P8 Cb GC GAGGAAGTGC (4) 1.6 0.0016 P8 Cb GC GAGGAAGTGT (3) 1.6 0.0016 P8 Cb GC GTACTCCTCT (2) 1.6 0.0016 Cb medulloblastoma TTAAAAAAAA (80) 53.2 0.0532 Cb medulloblastoma ATGTGAAATG 6.9 0.0069 Cb medulloblastoma GGCTGTACTG (2) 4.6 0.0046 Cb medulloblastoma ACCAGTTCTA (4) 2.3 0.0023 Cb medulloblastoma GAGAACCTGA (7) 2.3 0.0023 Cb medulloblastoma GAGGAAGTGC (4) 2.3 0.0023 Cb medulloblastoma TTTTTTTTTT (433) 2.3 0.0023 P8 GC+1d culture TTAAAAAAAA (80) 28.5 0.0285 P8 GC+1d culture TTTTTTTTTT (433) 13.7 0.0137 P8 GC+1d culture GGCTGTACTG (2) 11.4 0.0114 P8 GC+1d culture ATGTGAAATG 3.4 0.0034 P8 GC+1d culture AAAGCACTGA (2) 1.1 0.0011 P8 GC+1d culture GAGGAAGTGC (4) 1.1 0.0011 P8 GC+1d culture GAGGAAGTGT (3) 1.1 0.0011 P8 GC+SHH+1d culture TTAAAAAAAA (80) 34 0.034 P8 GC+SHH+1d culture ATGTGAAATG 5.9 0.0059 P8 GC+SHH+1d culture TTTTTTTTTT (433) 5.9 0.0059 P8 GC+SHH+1d culture GGCTGTACTG (2) 3.5 0.0035 P8 GC+SHH+1d culture AAAGCACTGA (2) 2.3 0.0023 P8 GC+SHH+1d culture ACCAGTTCTA (4) 1.2 0.0012 3T3 fibroblasts AAAGCACTGA (2) 10.5 0.0105 3T3 fibroblasts ACCAGTTCTA (4) 3.5 0.0035 3T3 fibroblasts GAGGAAGTGC (4) 3.5 0.0035 3T3 fibroblasts GTACTCCTCT (2) 3.5 0.0035 E15 cortex TTAAAAAAAA (80) 4.9 0.0049 E15 cortex TTTTTTTTTT (433) 4.9 0.0049 P1 cortex GGCTGTACTG (2) 13.6 0.0136 P1 cortex TTAAAAAAAA (80) 13.6 0.0136 P1 cortex ATGTGAAATG 4.5 0.0045 P1 cortex TTTTTTTTTT (433) 4.5 0.0045 Hypothalamus TTAAAAAAAA (80) 19.9 0.0199 Hypothalamus TTTTTTTTTT (433) 7.2 0.0072 Hypothalamus ACCAGTTCTA (4) 3.6 0.0036 Hypothalamus ATGTGAAATG 1.8 0.0018 Hypothalamus GGCTGTACTG (2) 1.8 0.0018 E12.5 retina GGCTGTACTG (2) 16.9 0.0169 E12.5 retina AAAGCACTGA (2) 11.3 0.0113 E12.5 retina TTAAAAAAAA (80) 11.3 0.0113 E12.5 retina ATGTGAAATG 9.4 0.0094 E12.5 retina TTTTTTTTTT (433) 7.5 0.0075 E12.5 retina ACCAGTTCTA (4) 1.9 0.0019 E14.5 retina TTTTTTTTTT (433) 23.7 0.0237 E14.5 retina TTAAAAAAAA (80) 16.4 0.0164 E14.5 retina ATGTGAAATG 7.3 0.0073 E14.5 retina ACCAGTTCTA (4) 5.5 0.0055 E14.5 retina AAAGCACTGA (2) 3.6 0.0036 E14.5 retina GGCTGTACTG (2) 3.6 0.0036 E14.5 retina GTACTCCTCT (2) 1.8 0.0018 E16.5 retina TTAAAAAAAA (80) 16.3 0.0163 E16.5 retina ACCAGTTCTA (4) 7.2 0.0072 E16.5 retina TTTTTTTTTT (433) 5.4 0.0054 E16.5 retina AAGAGACTTG 1.8 0.0018 E16.5 retina ATGTGAAATG 1.8 0.0018 E16.5 retina CCTTGAGTCC (2) 1.8 0.0018 E16.5 retina GAGGAAGTGC (4) 1.8 0.0018 E16.5 retina GGCTGTACTG (2) 1.8 0.0018 E16.5 retina GTACTCCTCT (2) 1.8 0.0018 E18.5 retina TTAAAAAAAA (80) 50.9 0.0509 E18.5 retina ATGTGAAATG 12.7 0.0127 E18.5 retina TTTTTTTTTT (433) 10.9 0.0109 E18.5 retina GAGGAAGTGC (4) 1.8 0.0018 E18.5 retina GGCTGTACTG (2) 1.8 0.0018 P0.5 retina TTAAAAAAAA (80) 17.7 0.0177 P0.5 retina TTTTTTTTTT (433) 9.8 0.0098 P0.5 retina GAGGAAGTGC (4) 5.9 0.0059 P0.5 retina AAAGCACTGA (2) 2 0.002 P0.5 retina ACCAGTTCTA (4) 2 0.002 P0.5 retina CCTTGAGTCC (2) 2 0.002 P0.5 retina GAGAACCTGA (7) 2 0.002 P2.5 retina TTAAAAAAAA (80) 40.5 0.0405 P2.5 retina ATGTGAAATG 7 0.007 P2.5 retina TTTTTTTTTT (433) 7 0.007 P2.5 retina GGCTGTACTG (2) 5.3 0.0053 P2.5 retina AAGAGACTTG 1.8 0.0018 P4.5 retina TTAAAAAAAA (80) 47.6 0.0476 P4.5 retina TTTTTTTTTT (433) 9.9 0.0099 P4.5 retina ATGTGAAATG 7.9 0.0079 P4.5 retina ACCAGTTCTA (4) 4 0.004 P4.5 retina GGCTGTACTG (2) 2 0.002 P6.5 retina TTAAAAAAAA (80) 16.7 0.0167 P6.5 retina TTTTTTTTTT (433) 8.3 0.0083 P6.5 retina CCTTGAGTCC (2) 3.3 0.0033 P6.5 retina GGCTGTACTG (2) 3.3 0.0033 P6.5 retina AAAGCACTGA (2) 1.7 0.0017 P6.5 retina ATGTGAAATG 1.7 0.0017 P6.5 retina GAGGAAGTGC (4) 1.7 0.0017 P10.5 crx- retina GGCTGTACTG (2) 13 0.013 P10.5 crx- retina TTAAAAAAAA (80) 13 0.013 P10.5 crx- retina ATGTGAAATG 7.4 0.0074 P10.5 crx+ retina ATGTGAAATG 7.7 0.0077 P10.5 crx+ retina TTAAAAAAAA (80) 5.8 0.0058 P10.5 crx+ retina ACCAGTTCTA (4) 3.8 0.0038 P10.5 crx+ retina GAGGAAGTGT (3) 3.8 0.0038 P10.5 crx+ retina TTTTTTTTTT (433) 3.8 0.0038 Adult retinal ATGTGAAATG 7.4 0.0074 Adult retinal TTAAAAAAAA (80) 7.4 0.0074 Adult retinal TTTTTTTTTT (433) 7.4 0.0074 Adult retinal GGCTGTACTG (2) 3.7 0.0037 ONL TTAAAAAAAA (80) 7.7 0.0077 ONL AAAGCACTGA (2) 3.8 0.0038 ONL TTTTTTTTTT (433) 3.8 0.0038 ONL ACCAGTTCTA (4) 1.9 0.0019 ONL GAGAACCTGA (7) 1.9 0.0019