Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.4159	Thbs1	thrombospondin 1	2	2 65.0 cM	21825
Gene Ontology	calcium ion binding | cell adhesion | extracellular | extracellular space | extracellular space | heparin binding | negative regulation of angiogenesis | protein binding | structural molecule activity
Human Homolog	THBS1[thrombospondin 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 57 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCATATGTGA (2) 4.9 0.0049 P8 Cb GC GCCAACAAAC (3) 3.3 0.0033 P8 Cb GC CATATGTATA (3) 1.6 0.0016 P8 Cb GC CTGGCTGCCC (5) 1.6 0.0016 Cb medulloblastoma CCATATGTGA (2) 4.6 0.0046 Cb medulloblastoma CTGGCTGCCC (5) 2.3 0.0023 Cb medulloblastoma GCCAACAAAC (3) 2.3 0.0023 P8 GC+1d culture CCATATGTGA (2) 5.7 0.0057 P8 GC+SHH+1d culture CCATATGTGA (2) 2.3 0.0023 P8 GC+SHH+1d culture GCCAACAAAC (3) 2.3 0.0023 P8 GC+SHH+1d culture CTGCTGCCCT (16) 1.2 0.0012 P8 GC+SHH+1d culture CTGGCTGCCC (5) 1.2 0.0012 3T3 fibroblasts GATTTTTCCA (4) 17.5 0.0175 3T3 fibroblasts CCATATGTGA (2) 3.5 0.0035 E15 cortex CCATATGTGA (2) 4.9 0.0049 E15 cortex CTGCTGCCCT (16) 4.9 0.0049 P1 cortex CTGCTGCCCT (16) 4.5 0.0045 P1 cortex CTGGCTGCCC (5) 4.5 0.0045 Hypothalamus CTGGCTGCCC (5) 1.8 0.0018 Hypothalamus GCCAACAAAC (3) 1.8 0.0018 E12.5 retina CCATATGTGA (2) 9.4 0.0094 E12.5 retina CTGCTGCCCT (16) 1.9 0.0019 E12.5 retina TCCAAGAATG (3) 1.9 0.0019 E14.5 retina CCATATGTGA (2) 9.1 0.0091 E14.5 retina CTGCTGCCCT (16) 3.6 0.0036 E14.5 retina GCCAACAAAC (3) 3.6 0.0036 E14.5 retina TCCAAGAATG (3) 1.8 0.0018 E16.5 retina CCATATGTGA (2) 10.9 0.0109 E16.5 retina GCCAACAAAC (3) 9.1 0.0091 E16.5 retina CTGCTGCCCT (16) 5.4 0.0054 E16.5 retina TCCAAGAATG (3) 3.6 0.0036 E18.5 retina CCATATGTGA (2) 3.6 0.0036 E18.5 retina GCCAACAAAC (3) 1.8 0.0018 E18.5 retina TCCAAGAATG (3) 1.8 0.0018 P0.5 retina CATATGTATA (3) 3.9 0.0039 P0.5 retina CCATATGTGA (2) 3.9 0.0039 P0.5 retina CTGCTGCCCT (16) 2 0.002 P0.5 retina GCCAACAAAC (3) 2 0.002 P0.5 retina TCCAAGAATG (3) 2 0.002 P2.5 retina CCATATGTGA (2) 12.3 0.0123 P2.5 retina GCCAACAAAC (3) 8.8 0.0088 P4.5 retina GCCAACAAAC (3) 5.9 0.0059 P4.5 retina CCATATGTGA (2) 4 0.004 P4.5 retina CTGCTGCCCT (16) 2 0.002 P4.5 retina TCCAAGAATG (3) 2 0.002 P6.5 retina CCATATGTGA (2) 3.3 0.0033 P6.5 retina TCCAAGAATG (3) 3.3 0.0033 P10.5 crx- retina CCATATGTGA (2) 5.6 0.0056 P10.5 crx- retina CTGCTGCCCT (16) 1.9 0.0019 P10.5 crx+ retina GCCAACAAAC (3) 5.8 0.0058 P10.5 crx+ retina CCATATGTGA (2) 3.8 0.0038 Adult retinal GCCAACAAAC (3) 7.4 0.0074 Adult retinal CTGGCTGCCC (5) 3.7 0.0037 Adult retinal CCATATGTGA (2) 1.9 0.0019 Adult retinal CTGCTGCCCT (16) 1.9 0.0019 ONL GCCAACAAAC (3) 5.7 0.0057 ONL CCATATGTGA (2) 3.8 0.0038