Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.41702	6230403H02Rik	RIKEN cDNA 6230403H02 gene	12		67779
Mm.41702	1110038H03Rik	RIKEN cDNA 1110038H03 gene	12		66189
Mm.41702	Sox11	SRY-box containing gene 11	12	12	20666
Gene Ontology	DNA binding | nucleus | regulation of transcription, DNA-dependent | transcription factor activity | transcription factor complex
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 6 In Situ Hybridization Images

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SAGE Tags

Total 160 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTGAGTGTTT (3) 21.2 0.0212 P8 Cb GC TGGAGGCTCC (5) 21.2 0.0212 P8 Cb GC GCACTGTTAA (5) 19.6 0.0196 P8 Cb GC CAAATATGTT (11) 11.4 0.0114 P8 Cb GC CAGAGTGTAG (3) 11.4 0.0114 P8 Cb GC CTCTTAGCAG (3) 6.5 0.0065 P8 Cb GC ACAATGGCAT (4) 3.3 0.0033 P8 Cb GC GAATAGATAA (3) 3.3 0.0033 P8 Cb GC GTCAGAGAGA (6) 3.3 0.0033 P8 Cb GC TAAGGCTCAG (3) 3.3 0.0033 P8 Cb GC CAAACTCTAT (3) 1.6 0.0016 P8 Cb GC CTGATAACTA (4) 1.6 0.0016 P8 Cb GC GACTCCCCAC (4) 1.6 0.0016 P8 Cb GC GGATTCAACA (4) 1.6 0.0016 P8 Cb GC GTGATCGTGT (3) 1.6 0.0016 P8 Cb GC TAAACACATC (3) 1.6 0.0016 P8 Cb GC TATTTGCAAA (4) 1.6 0.0016 P8 Cb GC TGGCTTTTAT (8) 1.6 0.0016 Cb medulloblastoma GGATTCAACA (4) 4.6 0.0046 Cb medulloblastoma CAGAGTGTAG (3) 2.3 0.0023 P8 GC+1d culture TGGAGGCTCC (5) 33.1 0.0331 P8 GC+1d culture GCACTGTTAA (5) 22.8 0.0228 P8 GC+1d culture GTGAGTGTTT (3) 20.5 0.0205 P8 GC+1d culture CAAATATGTT (11) 8 0.008 P8 GC+1d culture CAGAGTGTAG (3) 6.8 0.0068 P8 GC+1d culture GAATAGATAA (3) 3.4 0.0034 P8 GC+1d culture CAAACTCTAT (3) 2.3 0.0023 P8 GC+1d culture CCTCACTTAA (8) 2.3 0.0023 P8 GC+1d culture GGATTCAACA (4) 2.3 0.0023 P8 GC+1d culture GTGAGGAAGG (9) 2.3 0.0023 P8 GC+1d culture TAAACACATC (3) 2.3 0.0023 P8 GC+1d culture ACAATGGCAT (4) 1.1 0.0011 P8 GC+1d culture CTCTTAGCAG (3) 1.1 0.0011 P8 GC+1d culture GCACTGGTAA (5) 1.1 0.0011 P8 GC+1d culture GTCAGAGAGA (6) 1.1 0.0011 P8 GC+1d culture TATAGAAGTA (3) 1.1 0.0011 P8 GC+1d culture TATTTGCAAA (4) 1.1 0.0011 P8 GC+1d culture TGGCTTTTAT (8) 1.1 0.0011 P8 GC+SHH+1d culture GCACTGTTAA (5) 16.4 0.0164 P8 GC+SHH+1d culture GTGAGTGTTT (3) 14.1 0.0141 P8 GC+SHH+1d culture TGGAGGCTCC (5) 12.9 0.0129 P8 GC+SHH+1d culture CAAATATGTT (11) 4.7 0.0047 P8 GC+SHH+1d culture CAGAGTGTAG (3) 4.7 0.0047 P8 GC+SHH+1d culture CCTCACTTAA (8) 4.7 0.0047 P8 GC+SHH+1d culture CTGATAACTA (4) 4.7 0.0047 P8 GC+SHH+1d culture TGGCTTTTAT (8) 4.7 0.0047 P8 GC+SHH+1d culture CTCTTAGCAG (3) 3.5 0.0035 P8 GC+SHH+1d culture GTCAGAGAGA (6) 3.5 0.0035 P8 GC+SHH+1d culture ACAATGGCAT (4) 2.3 0.0023 P8 GC+SHH+1d culture GGCACATCCA (3) 2.3 0.0023 P8 GC+SHH+1d culture GAATAGATAA (3) 1.2 0.0012 P8 GC+SHH+1d culture GCAGTCTAGC (3) 1.2 0.0012 P8 GC+SHH+1d culture TAAGGCTCAG (3) 1.2 0.0012 P8 GC+SHH+1d culture TGGATGCAGT (5) 1.2 0.0012 E15 cortex TGGAGGCTCC (5) 128.6 0.1286 E15 cortex GCACTGTTAA (5) 79.2 0.0792 E15 cortex GTGAGTGTTT (3) 64.3 0.0643 E15 cortex CTCTTAGCAG (3) 34.6 0.0346 E15 cortex CAAATATGTT (11) 24.7 0.0247 E15 cortex CAGAGTGTAG (3) 24.7 0.0247 E15 cortex GTCAGAGAGA (6) 14.8 0.0148 E15 cortex GCAGTCTAGC (3) 4.9 0.0049 E15 cortex GTGAGGAAGG (9) 4.9 0.0049 E15 cortex GTGATCGTGT (3) 4.9 0.0049 E15 cortex TAAGGCTCAG (3) 4.9 0.0049 E15 cortex TATTTGCAAA (4) 4.9 0.0049 P1 cortex CTCTTAGCAG (3) 13.6 0.0136 P1 cortex GCACTGTTAA (5) 13.6 0.0136 P1 cortex CAAATATGTT (11) 9.1 0.0091 P1 cortex TGGAGGCTCC (5) 9.1 0.0091 P1 cortex CAGAGTGTAG (3) 4.5 0.0045 P1 cortex GTGAGTGTTT (3) 4.5 0.0045 P1 cortex GTGATCGTGT (3) 4.5 0.0045 P1 cortex TATTTGCAAA (4) 4.5 0.0045 Hypothalamus CCTCACTTAA (8) 1.8 0.0018 Hypothalamus CTGATAACTA (4) 1.8 0.0018 Hypothalamus TATTTGCAAA (4) 1.8 0.0018 E12.5 retina GTGAGTGTTT (3) 20.7 0.0207 E12.5 retina TGGAGGCTCC (5) 20.7 0.0207 E12.5 retina GCACTGTTAA (5) 13.1 0.0131 E12.5 retina CCTCACTTAA (8) 9.4 0.0094 E12.5 retina GGATTCAACA (4) 5.6 0.0056 E12.5 retina GTCAGAGAGA (6) 5.6 0.0056 E12.5 retina CAAATATGTT (11) 3.8 0.0038 E12.5 retina GAATAGATAA (3) 3.8 0.0038 E12.5 retina GACTCCCCAC (4) 3.8 0.0038 E12.5 retina CAAACTCTAT (3) 1.9 0.0019 E12.5 retina CTGATAACTA (4) 1.9 0.0019 E12.5 retina TAAGGCTCAG (3) 1.9 0.0019 E12.5 retina TATTTGCAAA (4) 1.9 0.0019 E12.5 retina TGGATGCAGT (5) 1.9 0.0019 E14.5 retina GCACTGTTAA (5) 16.4 0.0164 E14.5 retina CCTCACTTAA (8) 10.9 0.0109 E14.5 retina GGCACATCCA (3) 3.6 0.0036 E14.5 retina CAGAGTGTAG (3) 1.8 0.0018 E14.5 retina TGGAGGCTCC (5) 1.8 0.0018 E14.5 retina TGGATGCAGT (5) 1.8 0.0018 E14.5 retina TGTTTTGAAG (7) 1.8 0.0018 E16.5 retina GTGAGTGTTT (3) 9.1 0.0091 E16.5 retina GCACTGTTAA (5) 7.2 0.0072 E16.5 retina CAAATATGTT (11) 5.4 0.0054 E16.5 retina CCTCACTTAA (8) 3.6 0.0036 E16.5 retina GGCACATCCA (3) 3.6 0.0036 E16.5 retina TGGAGGCTCC (5) 3.6 0.0036 E16.5 retina CTGATAACTA (4) 1.8 0.0018 E18.5 retina GTGAGTGTTT (3) 14.6 0.0146 E18.5 retina GCACTGTTAA (5) 9.1 0.0091 E18.5 retina CCTCACTTAA (8) 7.3 0.0073 E18.5 retina TGGAGGCTCC (5) 7.3 0.0073 E18.5 retina CAAATATGTT (11) 1.8 0.0018 E18.5 retina CAGAGTGTAG (3) 1.8 0.0018 E18.5 retina GGATTCAACA (4) 1.8 0.0018 E18.5 retina TAAGGCTCAG (3) 1.8 0.0018 E18.5 retina TGGCTTTTAT (8) 1.8 0.0018 P0.5 retina TGGAGGCTCC (5) 7.9 0.0079 P0.5 retina ACAATGGCAT (4) 3.9 0.0039 P0.5 retina CCTCACTTAA (8) 2 0.002 P0.5 retina CTCTTAGCAG (3) 2 0.002 P0.5 retina GCACTGTTAA (5) 2 0.002 P0.5 retina GTGAGGAAGG (9) 2 0.002 P0.5 retina GTGAGTGTTT (3) 2 0.002 P0.5 retina TAAGGCTCAG (3) 2 0.002 P0.5 retina TATTTGCAAA (4) 2 0.002 P0.5 retina TGTTTTGAAG (7) 2 0.002 P2.5 retina CCTCACTTAA (8) 12.3 0.0123 P2.5 retina GCACTGTTAA (5) 3.5 0.0035 P2.5 retina ACAATGGCAT (4) 1.8 0.0018 P2.5 retina CAAACTCTAT (3) 1.8 0.0018 P2.5 retina CAGAGTGTAG (3) 1.8 0.0018 P2.5 retina CTCTTAGCAG (3) 1.8 0.0018 P2.5 retina TATAGAAGTA (3) 1.8 0.0018 P2.5 retina TATTTGCAAA (4) 1.8 0.0018 P2.5 retina TGGAGGCTCC (5) 1.8 0.0018 P4.5 retina CCTCACTTAA (8) 21.8 0.0218 P4.5 retina GCACTGTTAA (5) 5.9 0.0059 P4.5 retina GTGAGTGTTT (3) 4 0.004 P4.5 retina CTGATAACTA (4) 2 0.002 P4.5 retina GCACTGGTAA (5) 2 0.002 P4.5 retina GGATTCAACA (4) 2 0.002 P4.5 retina TGGAGGCTCC (5) 2 0.002 P4.5 retina TGTTTTGAAG (7) 2 0.002 P6.5 retina CCTCACTTAA (8) 13.3 0.0133 P6.5 retina GGATTCAACA (4) 3.3 0.0033 P6.5 retina GACTCCCCAC (4) 1.7 0.0017 P6.5 retina TGTTTTGAAG (7) 1.7 0.0017 P10.5 crx- retina CAAATATGTT (11) 1.9 0.0019 P10.5 crx- retina CCTCACTTAA (8) 1.9 0.0019 P10.5 crx- retina GCACTGGTAA (5) 1.9 0.0019 P10.5 crx- retina GGATTCAACA (4) 1.9 0.0019 P10.5 crx- retina TGGAGGCTCC (5) 1.9 0.0019 P10.5 crx- retina TGTTTTGAAG (7) 1.9 0.0019 P10.5 crx+ retina CCTCACTTAA (8) 3.8 0.0038 P10.5 crx+ retina GGATTCAACA (4) 3.8 0.0038 Adult retinal CCTCACTTAA (8) 3.7 0.0037 Adult retinal CTGATAACTA (4) 1.9 0.0019 Adult retinal GGATTCAACA (4) 1.9 0.0019 Adult retinal TATAGAAGTA (3) 1.9 0.0019 Adult retinal TGGATGCAGT (5) 1.9 0.0019 ONL CCTCACTTAA (8) 7.7 0.0077 ONL TGGATGCAGT (5) 1.9 0.0019