Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.41860	Col16a1	procollagen, type XVI, alpha 1	4	4 D2.2	107581
Gene Ontology	cell adhesion | collagen | extracellular matrix structural constituent conferring tensile strength
Human Homolog	COL16A1[collagen, type XVI, alpha 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 18 In Situ Hybridization Images

Images -- Click to Enlarge

SAGE Tags

Total 56 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAGACATCTG (2) AAGGGGCCTT GAGGTGGCAG (2) GGGTTCCCCT (2) 6.4 0.0064 Cb medulloblastoma AAGACATCTG (2) AGGGGCTCTC (2) GAGGTGGCAG (2) GGACCTCCTG GGGTTCCCCT (2) 13.8 0.0138 P8 GC+1d culture AAGACATCTG (2) AGGGGCTCTC (2) GGGATGGGCC 5.6 0.0056 P8 GC+SHH+1d culture AAGACATCTG (2) AGGGGCTCTC (2) GAGGTGGCAG (2) 7 0.007 3T3 fibroblasts GGACCTCCTG GGGTTCCCCT (2) 31.5 0.0315 E15 cortex AAGACATCTG (2) AGGGGCTCTC (2) GAGGTGGCAG (2) GGACCTCCTG 19.6 0.0196 P1 cortex AGGGGCTCTC (2) 4.5 0.0045 Hypothalamus AAGACATCTG (2) AGGGGCTCTC (2) GGACCTCCTG 18.1 0.0181 E12.5 retina AAGACATCTG (2) GGGTTCTCCT 11.3 0.0113 E14.5 retina AAGACATCTG (2) GGGATGGGCC GGGTTCCCCT (2) GGGTTCTCCT 12.7 0.0127 E16.5 retina AAGACATCTG (2) GGGTTCCCCT (2) GGGTTCTCCT 9 0.009 E18.5 retina AAGACATCTG (2) GGGATGGGCC GGGTTCTCCT 12.7 0.0127 P0.5 retina GGGATGGGCC 2 0.002 P2.5 retina AAGACATCTG (2) GGGTTCCCCT (2) GGGTTCTCCT 17.6 0.0176 P4.5 retina AAGACATCTG (2) GGGTTCTCCT 9.9 0.0099 P6.5 retina AAGACATCTG (2) AAGGGGCCTT AGGGGCTCTC (2) GGGTTCCCCT (2) GGGTTCTCCT 21.8 0.0218 P10.5 crx- retina AAGACATCTG (2) AAGGGGCCTT AGGGGCTCTC (2) GGGTTCCCCT (2) 20.4 0.0204 Adult retinal AAGACATCTG (2) AGGGGCTCTC (2) GAGGTGGCAG (2) 9.4 0.0094 ONL GAGGTGGCAG (2) 1.9 0.0019