Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.4237	Top2a	topoisomerase (DNA) II alpha	11	11 57.0 cM	21973
Gene Ontology	ATP binding | chromosome condensation | chromosome segregation | condensed chromosome | DNA binding | DNA metabolism | DNA topoisomerase (ATP-hydrolyzing) activity | DNA topoisomerase activity | DNA topological change | embryonic cleavage | isomerase activity | nucleolus | nucleus
Human Homolog	TOP2A[topoisomerase (DNA) II alpha 170kDa]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 103 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC GAAAATAAAA (4) 11.4 0.0114 P8 Cb GC TCTGTGAGTT (4) 4.9 0.0049 P8 Cb GC TGCTGGTGCA (3) 4.9 0.0049 P8 Cb GC GGGGAGAGCT (7) 3.3 0.0033 P8 Cb GC TTACAGAGAG 3.3 0.0033 P8 Cb GC AGAAGTTGCT 1.6 0.0016 P8 Cb GC GAAAATGCTG (9) 1.6 0.0016 P8 Cb GC GAAAATGTGA (5) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma GAAAATAAAA (4) 4.6 0.0046 Cb medulloblastoma ATGTGACATT (3) 2.3 0.0023 Cb medulloblastoma GGGGAGAGCT (7) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture AGAAGTTGCT 4.6 0.0046 P8 GC+1d culture GAAAATAAAA (4) 2.3 0.0023 P8 GC+1d culture TGCTGGTGCA (3) 2.3 0.0023 P8 GC+1d culture GGGGAGAGCT (7) 1.1 0.0011 P8 GC+1d culture TCTGTGAGTT (4) 1.1 0.0011 P8 GC+1d culture TTACAGAGAG 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture AGAAGTTGCT 17.6 0.0176 P8 GC+SHH+1d culture GAAAATAAAA (4) 9.4 0.0094 P8 GC+SHH+1d culture TTACAGAGAG 4.7 0.0047 P8 GC+SHH+1d culture GGGGAGAGCT (7) 2.3 0.0023 P8 GC+SHH+1d culture TGCTGGTGCA (3) 2.3 0.0023 P8 GC+SHH+1d culture ATGTGACATT (3) 1.2 0.0012 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts CCCCTGTGGT (3) 28 0.028 3T3 fibroblasts TCTGTGAGTT (4) 7 0.007 3T3 fibroblasts TGCTGGTGCA (3) 7 0.007 3T3 fibroblasts AGAAGTTGCT 3.5 0.0035 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex CCCCTGTGGT (3) 14.8 0.0148 E15 cortex TGCTGGTGCA (3) 9.9 0.0099 E15 cortex AGAAGTTGCT 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex GAAAATAAAA (4) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus GAAAATAAAA (4) 5.4 0.0054 Hypothalamus GAAAATGTGA (5) 1.8 0.0018 Hypothalamus TGCTGGTGCA (3) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina GAAAATAAAA (4) 9.4 0.0094 E12.5 retina TTACAGAGAG 7.5 0.0075 E12.5 retina TCGGTAGTTG 3.8 0.0038 E12.5 retina AGAAGTTGCT 1.9 0.0019 E12.5 retina GGGGAGAGCT (7) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina AGAAGTTGCT 5.5 0.0055 E14.5 retina GAAAATAAAA (4) 3.6 0.0036 E14.5 retina GAAAATGTGA (5) 1.8 0.0018 E14.5 retina TCTGTGAGTT (4) 1.8 0.0018 E14.5 retina TGCTGGTGCA (3) 1.8 0.0018 E14.5 retina TTACAGAGAG 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina AGAAGTTGCT 3.6 0.0036 E16.5 retina GAAAATAAAA (4) 3.6 0.0036 E16.5 retina TGCTGGTGCA (3) 3.6 0.0036 E16.5 retina GGGGAGAGCT (7) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina GAAAATAAAA (4) 12.7 0.0127 E18.5 retina AGAAGTTGCT 1.8 0.0018 E18.5 retina ATGTGACATT (3) 1.8 0.0018 E18.5 retina CCCCTGTGGT (3) 1.8 0.0018 E18.5 retina TCGGTAGTTG 1.8 0.0018 E18.5 retina TTACAGAGAG 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina AGAAGTTGCT 25.5 0.0255 P0.5 retina GAAAATAAAA (4) 2 0.002 P0.5 retina TCTGTGAGTT (4) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina GAAAATAAAA (4) 7 0.007 P2.5 retina AGAAGTTGCT 3.5 0.0035 P2.5 retina ATGTGACATT (3) 3.5 0.0035 P2.5 retina TCGGTAGTTG 1.8 0.0018 P2.5 retina TCTGTGAGTT (4) 1.8 0.0018 P2.5 retina TGCTGGTGCA (3) 1.8 0.0018 P2.5 retina TTACAGAGAG 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina GAAAATAAAA (4) 11.9 0.0119 P4.5 retina AGAAGTTGCT 5.9 0.0059 P4.5 retina GGGGAGAGCT (7) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina GAAAATAAAA (4) 5 0.005 P6.5 retina GGGGAGAGCT (7) 1.7 0.0017 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina GAAAATGCTG (9) 1.9 0.0019 P10.5 crx- retina TGCTGGTGCA (3) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina ATGTGACATT (3) 1.9 0.0019 P10.5 crx+ retina GGGGAGAGCT (7) 1.9 0.0019 P10.5 crx+ retina TCTGTGAGTT (4) 1.9 0.0019 P10.5 crx+ retina TGCTGGTGCA (3) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal GAAAATAAAA (4) 1.9 0.0019 Adult retinal GGGGAGAGCT (7) 1.9 0.0019 Adult retinal TGCTGGTGCA (3) 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL GAAAATAAAA (4) 5.7 0.0057 ONL GAAAATGTGA (5) 3.8 0.0038 ONL ATGTGACATT (3) 1.9 0.0019 ONL TGCTGGTGCA (3) 1.9 0.0019