Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.4370
D0HXS9928E
DNA segment, human DXS9928E
X
108160
Human Homolog
FAM50A[family with sequence similarity 50, member A]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 56 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CCTTTAATCC (
355
)
52.2
0.0522
P8 Cb GC
TTGGAGCTGG
(
3
)
14.7
0.0147
P8 Cb GC
TTGGAAAAAA
(
8
)
1.6
0.0016
Cb medulloblastoma
CCTTTAATCC (
355
)
41.6
0.0416
Cb medulloblastoma
TTGGAGCTGG
(
3
)
4.6
0.0046
Cb medulloblastoma
CCCGGCCAGA (
5
)
2.3
0.0023
P8 GC+1d culture
CCTTTAATCC (
355
)
32
0.032
P8 GC+1d culture
TTGGAGCTGG
(
3
)
6.8
0.0068
P8 GC+1d culture
TTGGAAAAAA
(
8
)
2.3
0.0023
P8 GC+1d culture
CCCGGCCAGA (
5
)
1.1
0.0011
P8 GC+SHH+1d culture
CCTTTAATCC (
355
)
25.8
0.0258
P8 GC+SHH+1d culture
TTGGAGCTGG
(
3
)
5.9
0.0059
P8 GC+SHH+1d culture
TTGGAAAAAA
(
8
)
3.5
0.0035
P8 GC+SHH+1d culture
CCCGGCCAGA (
5
)
1.2
0.0012
3T3 fibroblasts
CCTTTAATCC (
355
)
70.1
0.0701
3T3 fibroblasts
TTGGAGCTGG
(
3
)
3.5
0.0035
E15 cortex
CCTTTAATCC (
355
)
54.4
0.0544
E15 cortex
CCCGGCCAGA (
5
)
9.9
0.0099
E15 cortex
TTGGAGCTGG
(
3
)
4.9
0.0049
P1 cortex
CCTTTAATCC (
355
)
154.5
0.1545
P1 cortex
TTGGAAAAAA
(
8
)
4.5
0.0045
P1 cortex
TTGGAGCTGG
(
3
)
4.5
0.0045
Hypothalamus
CCTTTAATCC (
355
)
19.9
0.0199
Hypothalamus
TTGGAGCTGG
(
3
)
5.4
0.0054
E12.5 retina
CCTTTAATCC (
355
)
75.1
0.0751
E12.5 retina
TTGGAGCTGG
(
3
)
9.4
0.0094
E12.5 retina
TTGGAAAAAA
(
8
)
1.9
0.0019
E14.5 retina
CCTTTAATCC (
355
)
120.3
0.1203
E14.5 retina
TTGGAGCTGG
(
3
)
1.8
0.0018
E16.5 retina
CCTTTAATCC (
355
)
68.8
0.0688
E16.5 retina
TTGGAGCTGG
(
3
)
7.2
0.0072
E18.5 retina
CCTTTAATCC (
355
)
23.6
0.0236
E18.5 retina
TTGGAAAAAA
(
8
)
9.1
0.0091
E18.5 retina
TTGGAGCTGG
(
3
)
7.3
0.0073
P0.5 retina
CCTTTAATCC (
355
)
72.6
0.0726
P0.5 retina
CCCGGCCAGA (
5
)
2
0.002
P0.5 retina
TTGGAGCTGG
(
3
)
2
0.002
P2.5 retina
CCTTTAATCC (
355
)
70.4
0.0704
P2.5 retina
TTGGAGCTGG
(
3
)
10.6
0.0106
P2.5 retina
TTGGAAAAAA
(
8
)
3.5
0.0035
P4.5 retina
CCTTTAATCC (
355
)
43.6
0.0436
P4.5 retina
TTGGAGCTGG
(
3
)
21.8
0.0218
P6.5 retina
CCTTTAATCC (
355
)
70
0.07
P6.5 retina
TTGGAGCTGG
(
3
)
13.3
0.0133
P6.5 retina
TTGGAAAAAA
(
8
)
5
0.005
P10.5 crx- retina
CCTTTAATCC (
355
)
63.2
0.0632
P10.5 crx+ retina
CCTTTAATCC (
355
)
38.4
0.0384
P10.5 crx+ retina
TTGGAGCTGG
(
3
)
1.9
0.0019
Adult retinal
CCTTTAATCC (
355
)
129.6
0.1296
Adult retinal
CCCGGCCAGA (
5
)
1.9
0.0019
Adult retinal
TTGGAAAAAA
(
8
)
1.9
0.0019
Adult retinal
TTGGAGCTGG
(
3
)
1.9
0.0019
ONL
CCTTTAATCC (
355
)
84.3
0.0843
ONL
TTGGAGCTGG
(
3
)
5.7
0.0057
ONL
CCCGGCCAGA (
5
)
1.9
0.0019
ONL
TTGGAAAAAA
(
8
)
1.9
0.0019
