| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AGGATGATTT (2) ATAAAAATAG (3)
| 3.2 | 0.0032 |
| P8 GC+1d culture | AGGATGATTT (2) ATAAAAATAG (3) TCCTTTTTCA (2) TCCTTTTTCT (3)
| 11.4 | 0.0114 |
| P8 GC+SHH+1d culture | AGGATGATTT (2) TCCTTTTTCT (3)
| 4.7 | 0.0047 |
| E15 cortex | ATAAAAATAG (3)
| 4.9 | 0.0049 |
| P1 cortex | ATAAAAATAG (3)
| 4.5 | 0.0045 |
| Hypothalamus | AGGATGATTT (2) ATAAAAATAG (3) TCCTTTTTCT (3)
| 5.4 | 0.0054 |
| E12.5 retina | AGGATGATTT (2) ATAAAAATAG (3)
| 3.8 | 0.0038 |
| E14.5 retina | AACTGGGTTC (2) AGGATGATTT (2) ATAAAAATAG (3) TCCTTTTTCA (2) TCCTTTTTCT (3)
| 10.8 | 0.0108 |
| E16.5 retina | AGGATGATTT (2) TCCTTTTTCA (2)
| 3.6 | 0.0036 |
| E18.5 retina | ATAAAAATAG (3) TCCTTTTTCT (3)
| 10.9 | 0.0109 |
| P0.5 retina | AACTGGGTTC (2)
| 3.9 | 0.0039 |
| P2.5 retina | TCCTTTTTCT (3)
| 3.5 | 0.0035 |
| P4.5 retina | AGGATGATTT (2) TCCTTTTTCT (3)
| 7.9 | 0.0079 |
| P6.5 retina | ATAAAAATAG (3)
| 1.7 | 0.0017 |
| P10.5 crx- retina | AGGATGATTT (2) TCCTTTTTCT (3)
| 3.8 | 0.0038 |
| P10.5 crx+ retina | TCCTTTTTCT (3)
| 1.9 | 0.0019 |
| ONL | ATAAAAATAG (3)
| 1.9 | 0.0019 |