Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.4541	Sox2	SRY-box containing gene 2	3	3 A3 (3 15.0 cM)	20674
Gene Ontology	cell fate specification | cytoplasm | DNA binding | nucleus | nucleus | regulation of transcription, DNA-dependent | transcription factor activity
Human Homolog	SOX2[SRY (sex determining region Y)-box 2]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 17 In Situ Hybridization Images

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SAGE Tags

Total 76 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCCCAGCCTT (2) 6.5 0.0065 P8 Cb GC GTCTGTGGCA (5) 4.9 0.0049 P8 Cb GC GATTCTCGGC 3.3 0.0033 P8 Cb GC TATATATTTG (5) 1.6 0.0016 P8 Cb GC TGAATACACA (3) 1.6 0.0016 Cb medulloblastoma GTCTGTGGCA (5) 25.4 0.0254 Cb medulloblastoma GCCCAGCCTT (2) 4.6 0.0046 P8 GC+1d culture GCCCAGCCTT (2) 11.4 0.0114 P8 GC+1d culture GTCTGTGGCA (5) 5.7 0.0057 P8 GC+1d culture CTGGAACCCA (4) 1.1 0.0011 P8 GC+1d culture GATTCTCGGC 1.1 0.0011 P8 GC+1d culture TGAATACACA (3) 1.1 0.0011 P8 GC+SHH+1d culture GCCCAGCCTT (2) 11.7 0.0117 P8 GC+SHH+1d culture GTCTGTGGCA (5) 3.5 0.0035 P8 GC+SHH+1d culture TGAATACACA (3) 3.5 0.0035 3T3 fibroblasts GCCCAGCCTT (2) 35 0.035 3T3 fibroblasts CCTTTAGTCT (7) 3.5 0.0035 E15 cortex GCCCAGCCTT (2) 19.8 0.0198 E15 cortex CCTTTAGTCT (7) 4.9 0.0049 E15 cortex GATTCTCGGC 4.9 0.0049 E15 cortex GTCTGTGGCA (5) 4.9 0.0049 P1 cortex GTCTGTGGCA (5) 9.1 0.0091 P1 cortex GATTCTCGGC 4.5 0.0045 P1 cortex GCCCAGCCTT (2) 4.5 0.0045 Hypothalamus GCCCAGCCTT (2) 9.1 0.0091 Hypothalamus GTCTGTGGCA (5) 9.1 0.0091 Hypothalamus TATATATTTG (5) 3.6 0.0036 Hypothalamus CCTTTAGTCT (7) 1.8 0.0018 E12.5 retina GATTCTCGGC 7.5 0.0075 E12.5 retina GCCCAGCCTT (2) 7.5 0.0075 E12.5 retina TATATATTTG (5) 5.6 0.0056 E12.5 retina CTGGAACCCA (4) 1.9 0.0019 E12.5 retina TGAATACACA (3) 1.9 0.0019 E14.5 retina TATATATTTG (5) 3.6 0.0036 E14.5 retina TGAATACACA (3) 3.6 0.0036 E14.5 retina CCTTTAGTCT (7) 1.8 0.0018 E14.5 retina GCCCAGCCTT (2) 1.8 0.0018 E14.5 retina GTCTGTGGCA (5) 1.8 0.0018 E16.5 retina GCCCAGCCTT (2) 12.7 0.0127 E16.5 retina GTCTGTGGCA (5) 7.2 0.0072 E16.5 retina TATATATTTG (5) 3.6 0.0036 E16.5 retina GATTCTCGGC 1.8 0.0018 E18.5 retina GCCCAGCCTT (2) 7.3 0.0073 E18.5 retina GTCTGTGGCA (5) 7.3 0.0073 E18.5 retina TATATATTTG (5) 7.3 0.0073 E18.5 retina GATTCTCGGC 1.8 0.0018 P0.5 retina GCCCAGCCTT (2) 13.7 0.0137 P0.5 retina GTCTGTGGCA (5) 13.7 0.0137 P0.5 retina TGAGGGCTGG (2) 7.9 0.0079 P0.5 retina CCTTTAGTCT (7) 5.9 0.0059 P0.5 retina GATTCTCGGC 3.9 0.0039 P0.5 retina CTGGAACCCA (4) 2 0.002 P0.5 retina TATATATTTG (5) 2 0.002 P2.5 retina GTCTGTGGCA (5) 10.6 0.0106 P2.5 retina TATATATTTG (5) 5.3 0.0053 P2.5 retina GCCCAGCCTT (2) 3.5 0.0035 P2.5 retina GATTCTCGGC 1.8 0.0018 P4.5 retina GTCTGTGGCA (5) 9.9 0.0099 P4.5 retina GCCCAGCCTT (2) 4 0.004 P4.5 retina TGAGGGCTGG (2) 2 0.002 P6.5 retina GTCTGTGGCA (5) 18.3 0.0183 P6.5 retina GCCCAGCCTT (2) 3.3 0.0033 P6.5 retina TATAGATCTG (5) 1.7 0.0017 P6.5 retina TGAATACACA (3) 1.7 0.0017 P10.5 crx- retina GTCTGTGGCA (5) 14.9 0.0149 P10.5 crx- retina CTGGAACCCA (4) 1.9 0.0019 P10.5 crx- retina GCCCAGCCTT (2) 1.9 0.0019 P10.5 crx- retina TATAGATCTG (5) 1.9 0.0019 P10.5 crx+ retina GCCCAGCCTT (2) 13.5 0.0135 P10.5 crx+ retina GTCTGTGGCA (5) 11.5 0.0115 Adult retinal GTCTGTGGCA (5) 14.8 0.0148 Adult retinal GCCCAGCCTT (2) 9.3 0.0093 Adult retinal TGAATACACA (3) 1.9 0.0019 Adult retinal TGAGGGCTGG (2) 1.9 0.0019 ONL CCTTTAGTCT (7) 1.9 0.0019 ONL GCCCAGCCTT (2) 1.9 0.0019