Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.4541	Sox2	SRY-box containing gene 2	3	3 A3 (3 15.0 cM)	20674
Gene Ontology	cell fate specification | cytoplasm | DNA binding | nucleus | nucleus | regulation of transcription, DNA-dependent | transcription factor activity
Human Homolog	SOX2[SRY (sex determining region Y)-box 2]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 17 In Situ Hybridization Images

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SAGE Tags

Total 33 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GATTCTCGGC 3.3 0.0033 P8 Cb GC TATATATTTG 1.6 0.0016 P8 Cb GC TGAATACACA (2) 1.6 0.0016 P8 GC+1d culture GATTCTCGGC 1.1 0.0011 P8 GC+1d culture TGAATACACA (2) 1.1 0.0011 P8 GC+SHH+1d culture TGAATACACA (2) 3.5 0.0035 3T3 fibroblasts CCTTTAGTCT (2) 3.5 0.0035 E15 cortex CCTTTAGTCT (2) 4.9 0.0049 E15 cortex GATTCTCGGC 4.9 0.0049 P1 cortex GATTCTCGGC 4.5 0.0045 Hypothalamus TATATATTTG 3.6 0.0036 Hypothalamus CCTTTAGTCT (2) 1.8 0.0018 E12.5 retina GATTCTCGGC 7.5 0.0075 E12.5 retina TATATATTTG 5.6 0.0056 E12.5 retina TGAATACACA (2) 1.9 0.0019 E14.5 retina TATATATTTG 3.6 0.0036 E14.5 retina TGAATACACA (2) 3.6 0.0036 E14.5 retina CCTTTAGTCT (2) 1.8 0.0018 E16.5 retina TATATATTTG 3.6 0.0036 E16.5 retina GATTCTCGGC 1.8 0.0018 E18.5 retina TATATATTTG 7.3 0.0073 E18.5 retina GATTCTCGGC 1.8 0.0018 P0.5 retina TGAGGGCTGG (2) 7.9 0.0079 P0.5 retina CCTTTAGTCT (2) 5.9 0.0059 P0.5 retina GATTCTCGGC 3.9 0.0039 P0.5 retina TATATATTTG 2 0.002 P2.5 retina TATATATTTG 5.3 0.0053 P2.5 retina GATTCTCGGC 1.8 0.0018 P4.5 retina TGAGGGCTGG (2) 2 0.002 P6.5 retina TGAATACACA (2) 1.7 0.0017 Adult retinal TGAATACACA (2) 1.9 0.0019 Adult retinal TGAGGGCTGG (2) 1.9 0.0019 ONL CCTTTAGTCT (2) 1.9 0.0019