Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.4619	Msh2	mutS homolog 2 (E. coli)	17	17 45.9 cM	17685
Gene Ontology	ATP binding | cell cycle arrest | damaged DNA binding | determination of adult life span | DNA binding | DNA metabolism | DNA repair | mismatch repair | negative regulation of DNA recombination | nucleus | postreplication repair | response to X-ray
Human Homolog	MSH2[mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 48 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TAGTTTGTAA (2) 4.9 0.0049 P8 Cb GC GCTGAAATGC (3) 1.6 0.0016 P8 Cb GC GTGGTGGAAG (8) 1.6 0.0016 P8 Cb GC TCGGAAGAGA (5) 1.6 0.0016 Cb medulloblastoma GCTGAAATGC (3) 11.6 0.0116 Cb medulloblastoma TAGTTTGTAA (2) 2.3 0.0023 Cb medulloblastoma TCGGAAGAGA (5) 2.3 0.0023 P8 GC+1d culture TAGTTTGTAA (2) 9.1 0.0091 P8 GC+1d culture GCTGAAATGC (3) 1.1 0.0011 P8 GC+1d culture TCAGCTTCCC (4) 1.1 0.0011 P8 GC+SHH+1d culture TAGTTTGTAA (2) 5.9 0.0059 P8 GC+SHH+1d culture GCTGAAATGC (3) 2.3 0.0023 Hypothalamus GCTGAAATGC (3) 10.9 0.0109 Hypothalamus TAGTTTGTAA (2) 7.2 0.0072 E12.5 retina TAGTTTGTAA (2) 7.5 0.0075 E12.5 retina CAGCAGTAGA (3) 1.9 0.0019 E12.5 retina GCTGAAATGC (3) 1.9 0.0019 E14.5 retina TAGTTTGTAA (2) 21.9 0.0219 E14.5 retina ACTTCTCTTA 3.6 0.0036 E14.5 retina GCAGTAAAGG (3) 3.6 0.0036 E14.5 retina GCTGAAATGC (3) 3.6 0.0036 E14.5 retina TCGGAAGAGA (5) 1.8 0.0018 E16.5 retina GCAGTAAAGG (3) 3.6 0.0036 E16.5 retina GCTGAAATGC (3) 1.8 0.0018 E16.5 retina TAGTTTGTAA (2) 1.8 0.0018 E16.5 retina TCGGAAGAGA (5) 1.8 0.0018 E18.5 retina TAGTTTGTAA (2) 27.3 0.0273 E18.5 retina CAGCAGTAGA (3) 3.6 0.0036 P0.5 retina TAGTTTGTAA (2) 3.9 0.0039 P2.5 retina TAGTTTGTAA (2) 12.3 0.0123 P2.5 retina ATTTAATTTA (2) 1.8 0.0018 P2.5 retina GCTGAAATGC (3) 1.8 0.0018 P2.5 retina GTGGTGGAAG (8) 1.8 0.0018 P2.5 retina TCAGCTTCCC (4) 1.8 0.0018 P4.5 retina TAGTTTGTAA (2) 21.8 0.0218 P4.5 retina GCTGAAATGC (3) 2 0.002 P4.5 retina TCAGCTTCCC (4) 2 0.002 P6.5 retina TAGTTTGTAA (2) 3.3 0.0033 P6.5 retina ATTTAATTTA (2) 1.7 0.0017 P10.5 crx- retina GCTGAAATGC (3) 3.7 0.0037 P10.5 crx+ retina TAGTTTGTAA (2) 5.8 0.0058 P10.5 crx+ retina ATTTAATTTA (2) 1.9 0.0019 P10.5 crx+ retina TCGGAAGAGA (5) 1.9 0.0019 Adult retinal TAGTTTGTAA (2) 9.3 0.0093 Adult retinal ATTTAATTTA (2) 1.9 0.0019 ONL TAGTTTGTAA (2) 5.7 0.0057 ONL ATTTAATTTA (2) 3.8 0.0038 ONL ACTTCTCTTA 1.9 0.0019