Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.4766
Vmp
vesicular membrane protein p24
13
22360
Gene Ontology
integral to membrane
Human Homolog
VMP[vesicular membrane protein p24]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 62 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
TGAAAAAAAA (
81
)
27.7
0.0277
P8 Cb GC
GTGGAAAAAA (
7
)
1.6
0.0016
P8 Cb GC
GTGGAGAGAA (
4
)
1.6
0.0016
P8 Cb GC
GTGGTGGACA (
5
)
1.6
0.0016
Cb medulloblastoma
TGAAAAAAAA (
81
)
78.6
0.0786
Cb medulloblastoma
CTTTCTAAGG
2.3
0.0023
Cb medulloblastoma
GTGGTGGACA (
5
)
2.3
0.0023
Cb medulloblastoma
TAATTTTCCA
(
2
)
2.3
0.0023
P8 GC+1d culture
TGAAAAAAAA (
81
)
26.3
0.0263
P8 GC+1d culture
GTGGAAAAAA (
7
)
2.3
0.0023
P8 GC+1d culture
GTGGTGGACA (
5
)
1.1
0.0011
P8 GC+SHH+1d culture
TGAAAAAAAA (
81
)
57.4
0.0574
P8 GC+SHH+1d culture
CTTTCTAAGG
1.2
0.0012
3T3 fibroblasts
TGAAAAAAAA (
81
)
7
0.007
3T3 fibroblasts
GTGGTGGACA (
5
)
3.5
0.0035
E15 cortex
TGAAAAAAAA (
81
)
29.7
0.0297
E15 cortex
GTGGTGGACA (
5
)
4.9
0.0049
P1 cortex
TAATTTTCCA
(
2
)
9.1
0.0091
P1 cortex
GTGGAAAAAA (
7
)
4.5
0.0045
P1 cortex
TGAAAAAAAA (
81
)
4.5
0.0045
Hypothalamus
TAATTTTCCA
(
2
)
36.2
0.0362
Hypothalamus
TGAAAAAAAA (
81
)
36.2
0.0362
Hypothalamus
TGTTCCTAGA
(
2
)
5.4
0.0054
Hypothalamus
GTGGAAAAAA (
7
)
3.6
0.0036
Hypothalamus
CTTTCTAAGG
1.8
0.0018
Hypothalamus
GAACTGGGAA (
7
)
1.8
0.0018
Hypothalamus
GAAGACAGCA (
5
)
1.8
0.0018
Hypothalamus
GTGGAGAGAA (
4
)
1.8
0.0018
E12.5 retina
TGAAAAAAAA (
81
)
31.9
0.0319
E14.5 retina
TGAAAAAAAA (
81
)
49.2
0.0492
E14.5 retina
GTGGAAAAAA (
7
)
3.6
0.0036
E16.5 retina
TGAAAAAAAA (
81
)
16.3
0.0163
E16.5 retina
GTGGAAAAAA (
7
)
3.6
0.0036
E16.5 retina
GTGGAGAGAA (
4
)
1.8
0.0018
E16.5 retina
TGTTCCTAGA
(
2
)
1.8
0.0018
E18.5 retina
TGAAAAAAAA (
81
)
74.6
0.0746
E18.5 retina
TGTACATTTC (
3
)
3.6
0.0036
E18.5 retina
GTGGAAAAAA (
7
)
1.8
0.0018
P0.5 retina
TGAAAAAAAA (
81
)
15.7
0.0157
P0.5 retina
GAACTGGGAA (
7
)
2
0.002
P0.5 retina
GAAGACAGCA (
5
)
2
0.002
P0.5 retina
GTGGAAAAAA (
7
)
2
0.002
P0.5 retina
TAATTTTCCA
(
2
)
2
0.002
P2.5 retina
TGAAAAAAAA (
81
)
42.2
0.0422
P2.5 retina
GAAGACAGCA (
5
)
3.5
0.0035
P4.5 retina
TGAAAAAAAA (
81
)
43.6
0.0436
P4.5 retina
GTGGAAAAAA (
7
)
5.9
0.0059
P4.5 retina
TAATTTTCCA
(
2
)
2
0.002
P6.5 retina
TGAAAAAAAA (
81
)
33.3
0.0333
P6.5 retina
GTGGAAAAAA (
7
)
8.3
0.0083
P6.5 retina
GTGGTGGACA (
5
)
1.7
0.0017
P10.5 crx- retina
TGAAAAAAAA (
81
)
9.3
0.0093
P10.5 crx- retina
TAATTTTCCA
(
2
)
1.9
0.0019
P10.5 crx+ retina
TGAAAAAAAA (
81
)
19.2
0.0192
P10.5 crx+ retina
GAACTGGGAA (
7
)
1.9
0.0019
P10.5 crx+ retina
GTGGAAAAAA (
7
)
1.9
0.0019
P10.5 crx+ retina
TAATTTTCCA
(
2
)
1.9
0.0019
Adult retinal
TGAAAAAAAA (
81
)
13
0.013
Adult retinal
TAATTTTCCA
(
2
)
3.7
0.0037
Adult retinal
GTGGAAAAAA (
7
)
1.9
0.0019
Adult retinal
TGTACATTTC (
3
)
1.9
0.0019
ONL
TGAAAAAAAA (
81
)
19.2
0.0192
