Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.4800	Prdm1	PR domain containing 1, with ZNF domain	10	10 27.0 cM	12142
Gene Ontology	ATP binding | DNA binding | nucleic acid binding | nucleus | regulation of transcription, DNA-dependent | tRNA aminoacylation for protein translation | tRNA ligase activity | zinc ion binding
Human Homolog	PRDM1[PR domain containing 1, with ZNF domain]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 51 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCTGCCTGTC (3) 4.9 0.0049 P8 Cb GC CTTTAAAAAA (15) 3.3 0.0033 Cb medulloblastoma CTTTAAAAAA (15) 9.2 0.0092 Cb medulloblastoma GCTGCCTGTC (3) 6.9 0.0069 Cb medulloblastoma CTCACTGCTC (2) 2.3 0.0023 P8 GC+1d culture CTTTAAAAAA (15) 2.3 0.0023 P8 GC+1d culture GCTGCCTGTC (3) 2.3 0.0023 P8 GC+SHH+1d culture CTCACTGCTC (2) 1.2 0.0012 P8 GC+SHH+1d culture CTTTAAAAAA (15) 1.2 0.0012 P8 GC+SHH+1d culture GCTGCCTGTC (3) 1.2 0.0012 E15 cortex CTCACTGCTC (2) 4.9 0.0049 P1 cortex CTTTAAAAAA (15) 4.5 0.0045 Hypothalamus GCTGCCTGTC (3) 7.2 0.0072 Hypothalamus CTTTAAAAAA (15) 5.4 0.0054 Hypothalamus CTCACTGCTC (2) 1.8 0.0018 Hypothalamus TTTACAAAAA (8) 1.8 0.0018 E12.5 retina CTCACTGCTC (2) 1.9 0.0019 E12.5 retina CTTTAAAAAA (15) 1.9 0.0019 E14.5 retina GCTGCCTGTC (3) 5.5 0.0055 E16.5 retina GCTGCCTGTC (3) 7.2 0.0072 E16.5 retina CTCACTGCTC (2) 3.6 0.0036 E16.5 retina CTTTAAAAAA (15) 3.6 0.0036 E16.5 retina TTTACAAAAA (8) 3.6 0.0036 E16.5 retina AGAGTGTTGA 1.8 0.0018 E18.5 retina CTTTAAAAAA (15) 27.3 0.0273 E18.5 retina GCTGCCTGTC (3) 7.3 0.0073 E18.5 retina CTCACTGCTC (2) 1.8 0.0018 P0.5 retina CTTTAAAAAA (15) 2 0.002 P2.5 retina CTTTAAAAAA (15) 10.6 0.0106 P2.5 retina AGAGTGTTGA 5.3 0.0053 P2.5 retina CTCACTGCTC (2) 5.3 0.0053 P2.5 retina GCTGCCTGTC (3) 1.8 0.0018 P4.5 retina CTTTAAAAAA (15) 17.8 0.0178 P4.5 retina CTCACTGCTC (2) 5.9 0.0059 P4.5 retina AGAGTGTTGA 2 0.002 P6.5 retina CTTTAAAAAA (15) 13.3 0.0133 P6.5 retina AGAGTGTTGA 1.7 0.0017 P6.5 retina CTCACTGCTC (2) 1.7 0.0017 P6.5 retina GCTGCCTGTC (3) 1.7 0.0017 P6.5 retina TTTACAAAAA (8) 1.7 0.0017 P10.5 crx- retina GCTGCCTGTC (3) 5.6 0.0056 P10.5 crx- retina CTCACTGCTC (2) 3.7 0.0037 P10.5 crx- retina CTTTAAAAAA (15) 1.9 0.0019 P10.5 crx+ retina CTTTAAAAAA (15) 5.8 0.0058 P10.5 crx+ retina CTCACTGCTC (2) 3.8 0.0038 P10.5 crx+ retina GCTGCCTGTC (3) 1.9 0.0019 Adult retinal CTTTAAAAAA (15) 7.4 0.0074 Adult retinal CTCACTGCTC (2) 5.6 0.0056 Adult retinal GCTGCCTGTC (3) 1.9 0.0019 ONL CTTTAAAAAA (15) 1.9 0.0019 ONL GCTGCCTGTC (3) 1.9 0.0019