Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.49544	Hcr	HCR (a-helix coiled-coil rod homolog)	17		240084
Gene Ontology	cell differentiation | nucleus
Human Homolog	C6orf18[chromosome 6 open reading frame 18]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 53 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AGACCCTGTC (35) 6.5 0.0065 P8 Cb GC CTCAGAGGTC (3) 3.3 0.0033 P8 Cb GC GAGTTTCTAA (3) 1.6 0.0016 Cb medulloblastoma AGACCCTGTC (35) 20.8 0.0208 Cb medulloblastoma CTCAGAGGTC (3) 18.5 0.0185 Cb medulloblastoma GAGTTTCTAA (3) 2.3 0.0023 P8 GC+1d culture AGACCCTGTC (35) 4.6 0.0046 P8 GC+1d culture CTCAGAGGTC (3) 3.4 0.0034 P8 GC+1d culture GAGTTTCTAA (3) 2.3 0.0023 P8 GC+SHH+1d culture CTCAGAGGTC (3) 4.7 0.0047 P8 GC+SHH+1d culture AGACCCTGTC (35) 1.2 0.0012 P8 GC+SHH+1d culture GAGTTTCTAA (3) 1.2 0.0012 3T3 fibroblasts ACATCAGCCC (5) 7 0.007 E15 cortex AGACCCTGTC (35) 14.8 0.0148 E15 cortex CTCAGAGGTC (3) 4.9 0.0049 E15 cortex GAGTTTCTAA (3) 4.9 0.0049 P1 cortex CTCAGAGGTC (3) 13.6 0.0136 P1 cortex AGACCCTGTC (35) 4.5 0.0045 Hypothalamus CTCAGAGGTC (3) 19.9 0.0199 Hypothalamus AGACCCTGTC (35) 1.8 0.0018 Hypothalamus GAGTTTCTAA (3) 1.8 0.0018 E12.5 retina AGACCCTGTC (35) 5.6 0.0056 E12.5 retina CTCAGAGGTC (3) 3.8 0.0038 E14.5 retina CTCAGAGGTC (3) 7.3 0.0073 E14.5 retina AGACCCTGTC (35) 5.5 0.0055 E16.5 retina CTCAGAGGTC (3) 5.4 0.0054 E16.5 retina AGACCCTGTC (35) 3.6 0.0036 E16.5 retina GAGTTTCTAA (3) 1.8 0.0018 E18.5 retina AGACCCTGTC (35) 10.9 0.0109 E18.5 retina CTCAGAGGTC (3) 5.5 0.0055 E18.5 retina GAGTTTCTAA (3) 3.6 0.0036 P0.5 retina GAGTTTCTAA (3) 3.9 0.0039 P0.5 retina AGACCCTGTC (35) 2 0.002 P0.5 retina CTCAGAGGTC (3) 2 0.002 P2.5 retina AGACCCTGTC (35) 12.3 0.0123 P2.5 retina CTCAGAGGTC (3) 7 0.007 P2.5 retina GAGTTTCTAA (3) 3.5 0.0035 P4.5 retina AGACCCTGTC (35) 7.9 0.0079 P4.5 retina CTCAGAGGTC (3) 4 0.004 P4.5 retina GAGTTTCTAA (3) 2 0.002 P6.5 retina AGACCCTGTC (35) 6.7 0.0067 P6.5 retina CTCAGAGGTC (3) 6.7 0.0067 P6.5 retina GAGTTTCTAA (3) 1.7 0.0017 P10.5 crx- retina CTCAGAGGTC (3) 9.3 0.0093 P10.5 crx- retina GAGTTTCTAA (3) 7.4 0.0074 P10.5 crx- retina AGACCCTGTC (35) 1.9 0.0019 P10.5 crx+ retina AGACCCTGTC (35) 11.5 0.0115 P10.5 crx+ retina GAGTTTCTAA (3) 7.7 0.0077 Adult retinal AGACCCTGTC (35) 13 0.013 Adult retinal CTCAGAGGTC (3) 5.6 0.0056 Adult retinal GAGTTTCTAA (3) 1.9 0.0019 ONL AGACCCTGTC (35) 17.2 0.0172 ONL ACATCAGCCC (5) 1.9 0.0019