Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.4974	Ncam1	neural cell adhesion molecule 1	9	9 28.0 cM	17967
Gene Ontology	cell adhesion | extracellular space | heparin binding | integral to membrane | membrane | plasma membrane | protein binding
Human Homolog	NCAM1[neural cell adhesion molecule 1] | NCAM1[neural cell adhesion molecule 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 120 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATGGGTACCA ATGGGTTCCA (2) CAAAAATAAA (2) CCAAATGCCA CTAAAAGCAA TTCAAGAATG (3) TTTAAGAATG (2) 47.2 0.0472 Cb medulloblastoma ATGGGTACCA ATGGGTTCCA (2) CAAAAATAAA (2) CACACGCGCA (2) TACCCTCGAA TTTAAGAATG (2) 90.1 0.0901 P8 GC+1d culture ATGGGTACCA ATGGGTTCCA (2) CAAAAATAAA (2) GCGAGACAAA TACCCTCGAA TCCCAGGGTC TTTAAGAATG (2) 48.9 0.0489 P8 GC+SHH+1d culture ATGGGTACCA ATGGGTTCCA (2) CAAAAATAAA (2) CTGGTCTTTA TACCCTCGAA TCCCAGGGTC TTCAAGAATG (3) TTTAAGAATG (2) 82.2 0.0822 3T3 fibroblasts ATGGGTACCA ATGGGTTCCA (2) CAAAAATAAA (2) CACACAGTGC (4) CCAAATGCCA 21 0.021 E15 cortex CAAAAATAAA (2) TCCCAGGGTC 9.8 0.0098 P1 cortex ATGGGTACCA CAAAAATAAA (2) CACACGCGCA (2) CTGGTCTTTA GCGAGACAAA 77.2 0.0772 Hypothalamus CAAAAATAAA (2) CACACGCGCA (2) TTTAAGAATG (2) 77.8 0.0778 E12.5 retina ATGGGTTCCA (2) CAAAAATAAA (2) GGAGGTTCCA TTTAAGAATG (2) 240.3 0.2403 E14.5 retina ATGGGTTCCA (2) CAAAAATAAA (2) CTAAAAGCAA CTGGTCTTTA TCCCAGGGTC TTTAAGAATG (2) 162 0.162 E16.5 retina ATGGGTACCA CAAAAATAAA (2) GCGAGACAAA TACCCTCGAA TCCCAGGGTC TTTAAGAATG (2) 222.7 0.2227 E18.5 retina ATGGGTACCA ATGGGTTCCA (2) CAAAAATAAA (2) CACACAGTGC (4) CTGGTCTTTA TTTAAGAATG (2) 407.5 0.4075 P0.5 retina ATGGGTACCA CAAAAATAAA (2) CTAAAAGCAA CTGGTCTTTA GCGAGACAAA TCCCAGGGTC TTTAAGAATG (2) 86.5 0.0865 P2.5 retina ATGGGTTCCA (2) CAAAAATAAA (2) CACACGCGCA (2) CTAAAAGCAA CTGGTCTTTA TTTAAGAATG (2) 269.4 0.2694 P4.5 retina ATGGGTTCCA (2) CAAAAATAAA (2) CTGGTCTTTA GCGAGACAAA GGAGGTTCCA GGTTTTCCTT (2) TACCCTCGAA TCCCAGGGTC 299.4 0.2994 P6.5 retina ATGGGTACCA ATGGGTTCCA (2) CAAAAATAAA (2) CTGGTCTTTA TACCCTCGAA TTTAAGAATG (2) 181.7 0.1817 P10.5 crx- retina ATGGGTTCCA (2) CAAAAATAAA (2) CACACGCGCA (2) CTGGTCTTTA TACCCTCGAA TCCCAGGGTC 115.3 0.1153 P10.5 crx+ retina ATGGGTACCA ATGGGTTCCA (2) CAAAAATAAA (2) CACACAGTGC (4) CTGGTCTTTA TTTAAGAATG (2) 148 0.148 Adult retinal ATGGGTACCA ATGGGTTCCA (2) CAAAAATAAA (2) CACACGCGCA (2) CCAAATGCCA TACCCTCGAA TCCCAGGGTC TTTAAGAATG (2) 105.8 0.1058 ONL ATGGGTACCA CAAAAATAAA (2) CACACGCGCA (2) CTAAAAGCAA CTGGTCTTTA GGTTTTCCTT (2) TACCCTCGAA TTTAAGAATG (2) 122.4 0.1224